1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tccaaggaattattggtgtcagatcattaacatggaatatttggccatgtaagttttggttttagtactaatgtacattctgattttggtgctaatgtagTATTACGAATCACTCCTGCTAGAAGTCAAAGAGGATAATGAGAAAGAAATTGCTGCTGCTACCGAGAAAGCAGTGGGCATAAAAGTACAAAAGTTACAAG
species | Oryza sativa |
transcript | LOC_Os02g09060.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGAGGAGTACAATGATCTCGTCACGTCTCAGCTTGAAAAACAAAGAAAT TATTACGAATCACTCCTGCTAGAAGTCAAAGAGGATAATGAGAAAGAAATTEST: gi|86500028|gb|CI142661.1|CI142661
genomic: TTGAGGAGTACAATGATCTCGTCACGTCTCAGCTTGAAAAACAAAGAAATgtaagtttaa ... gctaatgtagTATTACGAATCACTCCTGCTAGAAGTCAAAGAGGATAATGAGAAAGAAATT
EST: TTGAGGAGTACAATGATCTCGTCACGTCTCAGCTTGAAAAACAAAGAAAT TATTACGAATCACTCCTGCTAGAAGTCAAAGAGGATAATGAGAAAGAAATTEST: gi|29678198|gb|CB674473.1|CB674473
genomic: TTGAGGAGTACAATGATCTCGTCACGTCTCAGCTTGAAAAACAAAGAAATgtaagtttaa ... gctaatgtagTATTACGAATCACTCCTGCTAGAAGTCAAAGAGGATAATGAGAAAGAAATT
EST: TTGAGGAGTACAATGATCTCGTCACGTCTCAGCTTGAAAAACAAAGAAAT TATTACGAATCACTCCTGCTAGAAGTCAAAGAGGATAATGAGAAAGAAATTEST: gi|86412826|gb|CI067231.1|CI067231
genomic: TTGAGGAGTACAATGATCTCGTCACGTCTCAGCTTGAAAAACAAAGAAATgtaagtttaa ... gctaatgtagTATTACGAATCACTCCTGCTAGAAGTCAAAGAGGATAATGAGAAAGAAATT
EST: ATCTCGTCACGTCTCAGCTTGAAAAACAAAGAAAT TATTACGAATCACTCCTGCTAGAAGTCAAAGAGGATAATGAGAAAGAAATTEST: gi|89175817|gb|CI042838.1|CI042838
genomic: ATCTCGTCACGTCTCAGCTTGAAAAACAAAGAAATgtaagtttaa ... gctaatgtagTATTACGAATCACTCCTGCTAGAAGTCAAAGAGGATAATGAGAAAGAAATT
EST: CTCGTCACGTCTCAGCTTGAAAAACAAAGAAAT TATTACGAATCACTCCTGCTAGAAGTCAAAGAGGATAATGAGAAAGAAATTEST: gi|86495057|gb|CI137690.1|CI137690
genomic: CTCGTCACGTCTCAGCTTGAAAAACAAAGAAATgtaagtttaa ... gctaatgtagTATTACGAATCACTCCTGCTAGAAGTCAAAGAGGATAATGAGAAAGAAATT
EST: AGCTTGAAAAACAAAGAAAT TATTACGAATCACTCCTGCTAGAAGTCAAAGAGGATAATGAGAAAGAAATTEST: gi|87014873|gb|CI271472.1|CI271472
genomic: AGCTTGAAAAACAAAGAAATgtaagtttaa ... gctaatgtagTATTACGAATCACTCCTGCTAGAAGTCAAAGAGGATAATGAGAAAGAAATT
EST: TTGAGGAGTACAATGATCTCGTCACGTCTCAGCTTGAAAAACAAAGAAAT TATTACGAATCACTCCTGCTAGAAGTCAAAGAGGATAATGAGAAAGAAATTEST: gi|218484344|gb|FG954469.1|FG954469
genomic: TTGAGGAGTACAATGATCTCGTCACGTCTCAGCTTGAAAAACAAAGAAATgtaagtttaa ... gctaatgtagTATTACGAATCACTCCTGCTAGAAGTCAAAGAGGATAATGAGAAAGAAATT
EST: TTGAGGAGTACAATGATCTCGTCACGTCTCAGCTTGAAAAACAAAGAAAT TATTACGAATCACTCCTGCTAGAAGTCAAAGAGGATAATGAGAAAGAAATT
genomic: TTGAGGAGTACAATGATCTCGTCACGTCTCAGCTTGAAAAACAAAGAAATgtaagtttaa ... gctaatgtagTATTACGAATCACTCCTGCTAGAAGTCAAAGAGGATAATGAGAAAGAAATT
catgtaagttttggttttagtactaatgtacattctgattttggtgctaatgtagTATTACGAATCACTCCTGCTAGAAGTCAAAGAGGATAATGAGAAAGAAATTGCTGCTGCTACCGAGAAAGCAGTGGGCATAAAAGTACAAAAGTTACAAG
ttttagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccaaggaattattggtgtcagatcattaacatggaatatttggccatgtaagttttggttttagtactaatgtacattctgattttggtgctaatgtagTATTACGAATCACTCCTGCTAGAAGTCAAAGAGGATAATGAGAAAGAAATTGCTGCTGCTACCGAGAAAGCAGTGGGCATAAAAGTACAAAAGTTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT