1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtagatttctctttatgccccgttattgatcttgatctcttccctcagattctcttgctgttcattactttaagatttattcgttttgcagAAGAGGCAGCTGAAGAAGAACCAAAGTTCATCCCCTTTACTGGACCTGGGAGGCGTCTGGATGGGAAGGCTCCTAAAGATAAGGATGTATCAGCTTCATC
species | Oryza sativa |
transcript | LOC_Os02g08480.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACCTGAGCGACAAAAAGCTGCCGTTCCTCCAAGTACAGCGCCTACTGCTG AAGAGGCAGCTGAAGAAGAACCAAAGTTCATCCCCTTTACTGGACCTGGGAEST: gi|29641787|gb|CB646794.1|CB646794
genomic: ACCTGAGCGACAAAAAGCTGCTGTTCCTCCAAGTACAGCGCCTACTGCTGgtagatttct ... cgttttgcagAAGAGGCAGCTGAAGAAGAACCAAAGTTCATCCCCTTTACTGGACCTGGGA
EST: ACCTGAGCGACAAAAAGCTGCTGTTCCTCCAAGTACAGCGCCTACTGCTG AAGAGGCAGCTGAAGAAGAACCAAAGTTCATCCCCTTTACTGGACCTGGGAEST: gi|58599220|gb|CK009748.1|CK009748
genomic: ACCTGAGCGACAAAAAGCTGCTGTTCCTCCAAGTACAGCGCCTACTGCTGgtagatttct ... cgttttgcagAAGAGGCAGCTGAAGAAGAACCAAAGTTCATCCCCTTTACTGGACCTGGGA
EST: ACCTGAGCGACAAAAAGCTGCTGTTCCTCCAAGTACAGCGCCTACTGCTG AAGAGGCAGCTGAAGAAGAACCAAAGTTCATCCCCTTTACTGGACCTGGGAEST: gi|29641788|gb|CB646795.1|CB646795
genomic: ACCTGAGCGACAAAAAGCTGCTGTTCCTCCAAGTACAGCGCCTACTGCTGgtagatttct ... cgttttgcagAAGAGGCAGCTGAAGAAGAACCAAAGTTCATCCCCTTTACTGGACCTGGGA
EST: ACCTGAGCGACAAAAAGCTGCTGTTCCTCCAAGTACAGCGCCTACTGCTG AAGAGGCAGCTGAAGAAGAACCAAAGTTCATCCCCTTTACTGGACCTGGGAEST: gi|87018863|gb|CI256748.1|CI256748
genomic: ACCTGAGCGACAAAAAGCTGCTGTTCCTCCAAGTACAGCGCCTACTGCTGgtagatttct ... cgttttgcagAAGAGGCAGCTGAAGAAGAACCAAAGTTCATCCCCTTTACTGGACCTGGGA
EST: ACCTGAGCGACAAAAAGCTGCTGTTCCTCCAAGTACAGCGCCTACTGCTG AAGAGGCAGCTGAAGAAGAACCAAAGTTCATCCCCTTTACTGGACCTGGGAEST: gi|86527163|gb|CI167369.1|CI167369
genomic: ACCTGAGCGACAAAAAGCTGCTGTTCCTCCAAGTACAGCGCCTACTGCTGgtagatttct ... cgttttgcagAAGAGGCAGCTGAAGAAGAACCAAAGTTCATCCCCTTTACTGGACCTGGGA
EST: CTGTTCCTCCAAGTACAGCGCCTACTGCTG AAGAGGCAGCTGAAGAAGAACCAAAGTTCATCCCCTTTACTGGACCTGGGAEST: gi|33793328|gb|CF322545.1|CF322545
genomic: CTGTTCCTCCAAGTACAGCGCCTACTGCTGgtagatttct ... cgttttgcagAAGAGGCAGCTGAAGAAGAACCAAAGTTCATCCCCTTTACTGGACCTGGGA
EST: ACCTGAGCGACAAAAAGCTGCTGTTCCTCCAAGTACAGCGCCTACTGCTG AAGAGGCAGCTGAAGAAGAACCAAAGTTCATCCCCTTTACTGGACCTGGGAEST: gi|29663476|gb|CB659751.1|CB659751
genomic: ACCTGAGCGACAAAAAGCTGCTGTTCCTCCAAGTACAGCGCCTACTGCTGgtagatttct ... cgttttgcagAAGAGGCAGCTGAAGAAGAACCAAAGTTCATCCCCTTTACTGGACCTGGGA
EST: ACCTGAGCGACAAAAAGCTGCTGTTCCTCCAAGTACAGCGCCTACTGCTG AAGAGGCAGCTGAAGAAGAACCAAAGTTCATCCCCTTTACTGGACCTGGGAEST: gi|87018867|gb|CI256752.1|CI256752
genomic: ACCTGAGCGACAAAAAGCTGCTGTTCCTCCAAGTACAGCGCCTACTGCTGgtagatttct ... cgttttgcagAAGAGGCAGCTGAAGAAGAACCAAAGTTCATCCCCTTTACTGGACCTGGGA
EST: ACCTGAGCGACAAAAAGCTGCTGTTCCTCCAAGTACAGCGCCTACTGCTG AAGAGGCAGCTGAAGAAGAACCAAAGTTCATCCCCTTTACTGGACCTGGGA
genomic: ACCTGAGCGACAAAAAGCTGCTGTTCCTCCAAGTACAGCGCCTACTGCTGgtagatttct ... cgttttgcagAAGAGGCAGCTGAAGAAGAACCAAAGTTCATCCCCTTTACTGGACCTGGGA
ctcttccctcagattctcttgctgttcattactttaagatttattcgttttgcagAAGAGGCAGCTGAAGAAGAACCAAAGTTCATCCCCTTTACTGGACCTGGGAGGCGTCTGGATGGGAAGGCTCCTAAAGATAAGGATGTATCAGCTTCATC
ttcgtttt CT-rich tract
ttcattactttaagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagatttctctttatgccccgttattgatcttgatctcttccctcagattctcttgctgttcattactttaagatttattcgttttgcagAAGAGGCAGCTGAAGAAGAACCAAAGTTCATCCCCTTTACTGGACCTGGGAGGCGTCTGGATGGGAAGGCTCCTAAAGATAAGGATGTATCAGCTTCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT