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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtatgtctaatccagatcatcctttttcttagaatgctgttatgcatacaaatatgaaatatctacacttgtttctgataatatatttacctgaaacagAAATATAGAGAATAATTTGTTTTCTGGACCGGTTCCTCCAAAGTTGCTGAATGTGCCAAACTTCAA

Basic information

species Oryza sativa
transcript LOC_Os02g07960.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g07960.3 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G335638_T01 (Zea mays), 3'ss of exon 8
------tgtatgtctaatccagatcatcctttttcttaga-atgctgttatgcatacaaatatgaaatatctacacttgtttctgataatatatttacctg-aaacagAAATATAGAGAATAATTTGTTTTCTGGACCGGTTCCTCCAAAGTTGCTGAATGTGCCAAACTTCAA
      |  ||    | |||| || ||   || || || |  | |||| |||||||| |        ||| || || | ||||||||||| |||  || |  |||||||||| ||||||||||| ||||||||||||| |||||||| ||| |||||||  | |||||||||||
tgatgttaaattcacattccaaataatttattatcctaaatgttctgtcatgcatacga--------tatttatacctctttctgataatttatgaacatctaaacagAAATGTAGAGAATAATATGTTTTCTGGACCAGTTCCTCCGAAGCTGCTGAACATACCAAACTTCAA

upper sequence: LOC_Os02g07960.3 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G020986_T01 (Zea mays), 3'ss of exon 8
tgtatgtctaatccagatcatcctttttcttaga-atgctgttatgcatacaaatatgaaatatctacacttgtttctgataatatatttacctg-aaacagAAATATAGAGAATAATTTGTTTTCTGGACCGGTTCCTCCAAAGTTGCTGAATGTGCCAAACTTCAA
   ||    |   || || ||   || || || |  | |||| ||||||||||   |      |||     | ||||| ||| | ||| |||||  |||||||||| | ||||||||| ||||||||||||| |||||||| ||| |||| ||  | |||||||||||
--aattcacacctcaaattatttattgtcataaatgttctgtcatgcatacaatattcgtgactctttggctctttctaatactttatgtacctctaaacagAAATGTCGAGAATAATATGTTTTCTGGACCAGTTCCTCCGAAGCTGCTCAACATACCAAACTTCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catacaaatatgaaatatctacacttgtttctgataatatatttacctgaaacagAAATATAGAGAATAATTTGTTTTCTGGACCGGTTCCTCCAAAGTTGCTGAATGTGCCAAACTTCAA
                            ttctgat  putative branch site (score: 3)
                                         tttacct  putative PPT
                        ttgtttctgataatat  TA-rich tract