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gtcagtaaataatattttgaattgatatttagctttcttcttggtcccttgcttttctttcatatgctttcactttcatcttcagATGGTAGATCCTGGTGGAATCTCTAATTGGTCAGTGACACATGTTGATTGGTCTGAAGGAAAATGGCATCCAAGGTCGTATAGAGCTATTGATGTTACCT
species | Oryza sativa |
transcript | LOC_Os02g07880.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGGGACGCAACTGTATTGCTGATGAGCATTATTTGCCAACCCTCTTCAAT ATGGTAGATCCTGGTGGAATCTCTAATTGGTCAGTGACACATGTTGATTGGEST: gi|427667|gb|D23801.1|D23801
genomic: AGGGACGCAACTGTATTGCTGATGAGCATTATTTGCCAACCCTCTTCAATgtcagtaaat ... tcatcttcagATGGTAGATCCTGGTGGAATCTCTAATTGGTCAGTGACACATGTTGATTGG
EST: AGGGACGCAACTGTATTGNTGATGAGCATTATTTGCCAACCCTCTTCAAT ATGGTAGATCCTGGTGGAATCTCTAATTGGTCAGTGNCACATGTTGATTGGEST: gi|29663728|gb|CB660003.1|CB660003
genomic: AGGGACGCAACTGTATTGCTGATGAGCATTATTTGCCAACCCTCTTCAATgtcagtaaat ... tcatcttcagATGGTAGATCCTGGTGGAATCTCTAATTGGTCAGTGACACATGTTGATTGG
EST: AGGGACGCAACTGTATTGCTGATGAGCATTATTTGCCAACCCTCTTCAAT ATGGTAGAT-CTCGGTGGAATCTCTAATTGGTCAGTGACACATGTTGATTGEST: gi|86492716|gb|CI135349.1|CI135349
genomic: AGGGACGCAACTGTATTGCTGATGAGCATTATTTGCCAACCCTCTTCAATgtcagtaaat ... tcatcttcagATGGTAGATCCT-GGTGGAATCTCTAATTGGTCAGTGACACATGTTGATTG
EST: AGGGACGCAACTGTATTGCTGATGAGCATTATTTGCCAACCCTCTTCAAT ATGGTAGATCCTGGTGGAATCTCTAATTGGTCAGTGACACATGTTGATTGG
genomic: AGGGACGCAACTGTATTGCTGATGAGCATTATTTGCCAACCCTCTTCAATgtcagtaaat ... tcatcttcagATGGTAGATCCTGGTGGAATCTCTAATTGGTCAGTGACACATGTTGATTGG
agctttcttcttggtcccttgcttttctttcatatgctttcactttcatcttcagATGGTAGATCCTGGTGGAATCTCTAATTGGTCAGTGACACATGTTGATTGGTCTGAAGGAAAATGGCATCCAAGGTCGTATAGAGCTATTGATGTTACCT
ctttcactttcatctt CT-rich tract
ttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtaaataatattttgaattgatatttagctttcttcttggtcccttgcttttctttcatatgctttcactttcatcttcagATGGTAGATCCTGGTGGAATCTCTAATTGGTCAGTGACACATGTTGATTGGTCTGAAGGAAAATGGCATCCAAGGTCGTATAGAGCTATTGATGTTACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT