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gtaaacaagttccatcttttatgaagataacatgtctgaggattaaagcattagtttaatctgttgtactgcactacagACATGGCCTGTGCGTTCACCAAGGCCTGTTATGGAAAAACTTGCTGCAGATACACCTCTTCTTACAGGACAG
species | Oryza sativa |
transcript | LOC_Os02g07870.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGCTAGAATNGGAATTTCA-GGTATCAAAAAGGAATTTACCATGCTCCAG ACATGGCCTGTGCGTTCACCAAGGCCTGTTATGGAAAAACTTGCTGCAGATEST: gi|58662103|gb|CK050783.1|CK050783
genomic: TGCTAGAATTGGAATTTCAGGGTATCAAAAAGGAATTTACCATGCTCCAGgtaaacaagt ... tgcactacagACATGGCCTGTGCGTTCACCAAGGCCTGTTATGGAAAAACTTGCTGCAGAT
EST: TGCTAGAATTGGAATTTCAGGGTATCAAAAAGGAATTTACCATGCTCCAG ACATGGCCTGTGCGTTCACCAAGGCCTGTTEST: gi|58674416|gb|CK063102.1|CK063102
genomic: TGCTAGAATTGGAATTTCAGGGTATCAAAAAGGAATTTACCATGCTCCAGgtaaacaagt ... tgcactacagACATGGCCTGTGCGTTCACCAAGGCCTGTT
EST: TGCTAGAATTGGAATTTCAGGGTATCAAAAAGGAATTTACCATGCTCCAG ACATGGCCTGTGCGTTCACCAAGGCCTGTTATGGAAAAACTTGCTGCAGATEST: gi|27547953|gb|CA765929.2|CA765929
genomic: TGCTAGAATTGGAATTTCAGGGTATCAAAAAGGAATTTACCATGCTCCAGgtaaacaagt ... tgcactacagACATGGCCTGTGCGTTCACCAAGGCCTGTTATGGAAAAACTTGCTGCAGAT
EST: TGCTAGAATTGGAATTTCAGGGTATCAAAAAGGAATTTACCATGCTCCAG ACATGGCCTGTGCGTTCACCAAGGCCTGTTATGGAAAAACTTGCTGCAGAT
genomic: TGCTAGAATTGGAATTTCAGGGTATCAAAAAGGAATTTACCATGCTCCAGgtaaacaagt ... tgcactacagACATGGCCTGTGCGTTCACCAAGGCCTGTTATGGAAAAACTTGCTGCAGAT
agataacatgtctgaggattaaagcattagtttaatctgttgtactgcactacagACATGGCCTGTGCGTTCACCAAGGCCTGTTATGGAAAAACTTGCTGCAGATACACCTCTTCTTACAGGACAG
attagtttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacaagttccatcttttatgaagataacatgtctgaggattaaagcattagtttaatctgttgtactgcactacagACATGGCCTGTGCGTTCACCAAGGCCTGTTATGGAAAAACTTGCTGCAGATACACCTCTTCTTACAGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT