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...ttgagaaaaaacaatttacatgcatcttaccttttgcaaaagtatatacttatatctttttcttccactgtaattactgctggcaacttgtttactgcagTAGTAAACCAACTAGTGGGATGAGTGGGCCTTCTCATGGAGAAGAAAATTTTACAAGGTATAACTATGGGCACAGGACTGCTGCTGCGCCATGTGATTGG
species | Oryza sativa |
transcript | LOC_Os02g07070.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGAGACAATGGCCTTCTAATTGATGGTAGAAAGGTATTTTTTCAGTACAG TAGTAAACCAACTAGTGGGATGAGTGGGCCTTCTCATEST: gi|5002726|gb|AU067835.1|AU067835
genomic: GGAGACAATGGCCTTCTAATTGATGGTAGAAAGGTATTTTTTCAGTACAGgtacgtgccc ... tttactgcagTAGTAAACCAACTAGTGGGATGAGTGGGCCTTCTCAT
EST: GGAGACAATGGCCTTCTAATTGATGGTAGAAAGGTATTTTTTCAGTACAG TAGTAAACCAACTAGTGGGATGAGTGGGCCTTCTCATGGAGAAGAAAATTTEST: gi|58611340|gb|CK039052.1|CK039052
genomic: GGAGACAATGGCCTTCTAATTGATGGTAGAAAGGTATTTTTTCAGTACAGgtacgtgccc ... tttactgcagTAGTAAACCAACTAGTGGGATGAGTGGGCCTTCTCATGGAGAAGAAAATTT
EST: GGAGACAATGGCCTTCTAATTGATGGTAGAAAGGTATTTTTTCAGTACAG TAGTAAACCAACTAGTGGGATGAGTGGGCCTTCTCATGGAGAAGAAAA-TT
genomic: GGAGACAATGGCCTTCTAATTGATGGTAGAAAGGTATTTTTTCAGTACAGgtacgtgccc ... tttactgcagTAGTAAACCAACTAGTGGGATGAGTGGGCCTTCTCATGGAGAAGAAAATTT
atacttatatctttttcttccactgtaattactgctggcaacttgtttactgcagTAGTAAACCAACTAGTGGGATGAGTGGGCCTTCTCATGGAGAAGAAAATTTTACAAGGTATAACTATGGGCACAGGACTGCTGCTGCGCCATGTGATTGG
cttgttt CT-rich tract
tatatctttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgagaaaaaacaatttacatgcatcttaccttttgcaaaagtatatacttatatctttttcttccactgtaattactgctggcaacttgtttactgcagTAGTAAACCAACTAGTGGGATGAGTGGGCCTTCTCATGGAGAAGAAAATTTTACAAGGTATAACTATGGGCACAGGACTGCTGCTGCGCCATGTGATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - gaaaaaa
- - - - - - - - tacatgc
- - - - - - - - - - - - - - - -ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctggc