1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aaaaacataatttgtatatattttcatgctgatagtgctggcaggtgatataaccaacacccttatccatgtctcttttgctaatactaactccttacagTGGGGTTGATCGTTTCAAACGGCAGTTTGCTCATCTTGAGGAGAACTACAGCAGAGGAGAAAGAAGTACCCCCTTGCGGAGACAGCATGCGTCTTTGCCA
species | Oryza sativa |
transcript | LOC_Os02g04230.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTTCAGGAGTACATCAGAGGTGGAGAACAAATTAGCTTCCTCTATCCAAG TGGGGTTGATCGTTTCAAACGGCAGTTTGCTCATCTTGAGGAGAACTACAGEST: gi|29629373|gb|CB634384.1|CB634384
genomic: CTTCAGGAGTACATCAGAGGTGGAGAACAAATTAGCTTCCTCTATCCAAGgtgagcaaat ... ctccttacagTGGGGTTGATCGTTTCAAACGGCAGTTTGCTCATCTTGAGGAGAACTACAG
EST: CTTCAGGAGTACATCAGAGGTGGAGAACAAATTAGCTTCCTCTATCCAAG TGGGGTTGATCGTTTCAAACGGCAGTTTGCTCATCTTGAGGAGAACTACAG
genomic: CTTCAGGAGTACATCAGAGGTGGAGAACAAATTAGCTTCCTCTATCCAAGgtgagcaaat ... ctccttacagTGGGGTTGATCGTTTCAAACGGCAGTTTGCTCATCTTGAGGAGAACTACAG
tgatataaccaacacccttatccatgtctcttttgctaatactaactccttacagTGGGGTTGATCGTTTCAAACGGCAGTTTGCTCATCTTGAGGAGAACTACAGCAGAGGAGAAAGAAGTACCCCCTTGCGGAGACAGCATGCGTCTTTGCCA
tactaac putative branch site (score: 0)
ctccttac CT-rich tract
taatactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaacataatttgtatatattttcatgctgatagtgctggcaggtgatataaccaacacccttatccatgtctcttttgctaatactaactccttacagTGGGGTTGATCGTTTCAAACGGCAGTTTGCTCATCTTGAGGAGAACTACAGCAGAGGAGAAAGAAGTACCCCCTTGCGGAGACAGCATGCGTCTTTGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT