1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagctttctcatattcctattatgatgctgcttctttgaaaacatggagtgttttcagtttcatatagttaatcctcctactttgtctttgtgggctaatagGATGATCTGAAGAAGACTTGGCTTATTAAAAGGTGCCGGACAATGAATGCTAAATTAAG
species | Oryza sativa |
transcript | LOC_Os02g02690.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CATCAGCATCAATAT GATGATCTGAAGAAGACTTGGCTTATTAAAAGGTGCCGGACAATGAATGCTEST: gi|163917926|gb|EG714758.1|EG714758
genomic: CATCAGCATCAATATgtaagctttc ... gggctaatagGATGATCTGAAGAAGACTTGGCTTATTAAAAGGTGCCGGACAATGAATGCT
EST: TACTTATACAGTTCGTTAAAGACAAGAAATTGGAACATCAGCATCAATAT GATGATCTGAAGAAGACTTGGCTTATTAAAAGGTGCCGGACAATGAATGCTEST: gi|86505602|gb|CI148235.1|CI148235
genomic: TACTTATACAGTTCGTTAAAGACAAGAAATTGGAACATCAGCATCAATATgtaagctttc ... gggctaatagGATGATCTGAAGAAGACTTGGCTTATTAAAAGGTGCCGGACAATGAATGCT
EST: TACTTATACAGTTCGTTAAAGACAAGAAATTGGAACATCAGCATCAATAT GATGATCTGAAGAAGACTTGGCTTATTAAAAGGTGCCGGACCATGAATGCTEST: gi|86501777|gb|CI144410.1|CI144410
genomic: TACTTATACAGTTCGTTAAAGACAAGAAATTGGAACATCAGCATCAATATgtaagctttc ... gggctaatagGATGATCTGAAGAAGACTTGGCTTATTAAAAGGTGCCGGACAATGAATGCT
EST: TACTTATACAGTTCGTTAAAGACAAGAAATTGGAACATCAGCATCAATAT GATGATCTGAAGAAGACTTGGCTTATTAAAAGGTGCCGGACAATGAATGCTEST: gi|88227499|gb|CI226979.1|CI226979
genomic: TACTTATACAGTTCGTTAAAGACAAGAAATTGGAACATCAGCATCAATATgtaagctttc ... gggctaatagGATGATCTGAAGAAGACTTGGCTTATTAAAAGGTGCCGGACAATGAATGCT
EST: TACTTATACAGTTCGTTAAAGACAAGAAATTGGAACATCAGCATCAATAT GATGATCTGAAGAAGACTTGGCTTATTAAAAGGTGCCGGACAATGAATGCTEST: gi|396941424|gb|HO188633.1|HO188633
genomic: TACTTATACAGTTCGTTAAAGACAAGAAATTGGAACATCAGCATCAATATgtaagctttc ... gggctaatagGATGATCTGAAGAAGACTTGGCTTATTAAAAGGTGCCGGACAATGAATGCT
EST: TACTTATACAGTTCGTTAAAGACAAGAAATTGGAACATCAGCATCAATAT GATGATCTGAAGAAGACTTGGCTTATTAAAAGGTGCCGGACAATGAATGCTEST: gi|88974820|gb|CI023114.1|CI023114
genomic: TACTTATACAGTTCGTTAAAGACAAGAAATTGGAACATCAGCATCAATATgtaagctttc ... gggctaatagGATGATCTGAAGAAGACTTGGCTTATTAAAAGGTGCCGGACAATGAATGCT
EST: TACTTATACAGTTCGTTAAAGACAAGAAATTGGAACATCAGCATCAATAT GATGATCTGAAGAGGACTTGGCTTATTAAAAGGTGCCGGACAATGAATGCTEST: gi|163926568|gb|EG712432.1|EG712432
genomic: TACTTATACAGTTCGTTAAAGACAAGAAATTGGAACATCAGCATCAATATgtaagctttc ... gggctaatagGATGATCTGAAGAAGACTTGGCTTATTAAAAGGTGCCGGACAATGAATGCT
EST: GTTCGTTAAAGACAAGAAATTGGAACATCAGCATCAATAT GATGATCTGAAGAAGACTTGGCTTATTAAAAGGTGCCGGACAATGAATGCTEST: gi|86503019|gb|CI145652.1|CI145652
genomic: GTTCGTTAAAGACAAGAAATTGGAACATCAGCATCAATATgtaagctttc ... gggctaatagGATGATCTGAAGAAGACTTGGCTTATTAAAAGGTGCCGGACAATGAATGCT
EST: TACTTATACAGTTCGTTAAAGACAAGAAATTGGAACATCAGCATCAATAT GATGATCTGAAGAAGACTTGGCTTATTAAAAGGTGCCGGACAATGAATGCT
genomic: TACTTATACAGTTCGTTAAAGACAAGAAATTGGAACATCAGCATCAATATgtaagctttc ... gggctaatagGATGATCTGAAGAAGACTTGGCTTATTAAAAGGTGCCGGACAATGAATGCT
agtgttttcagtttcatatagttaatcctcctactttgtctttgtgggctaatagGATGATCTGAAGAAGACTTGGCTTATTAAAAGGTGCCGGACAATGAATGCTAAATTAAG
agttaat putative branch site (score: 16)
tttcatatagttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctttctcatattcctattatgatgctgcttctttgaaaacatggagtgttttcagtttcatatagttaatcctcctactttgtctttgtgggctaatagGATGATCTGAAGAAGACTTGGCTTATTAAAAGGTGCCGGACAATGAATGCTAAATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG