1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttagtgttctttataagtgattttgactcttgttttgatacaaaatgtctttttctttttacaaaaaaaggctaatctggttatccccttttttctgcatagCTTCTATTTCCAACAGGAGATGCTGCACGCCCATTCTCTATGCTTGGGCTTGGTGACATTGTGATACCTG
species | Oryza sativa |
transcript | LOC_Os02g02530.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCACTCCTGTTATGGTCAGTGTTGCAAAATCATTTGATGCACCGATAAAG CTTCTATTTCCAACAGGAGATGCTGCACGCCCATTCTCTATGCTTGGGCTTEST: gi|29629872|gb|CB634881.1|CB634881
genomic: TCACTCCTGTTATGGTCAGTGTTGCAAAATCATTTGATGCACCGATAAAGgttagtgttc ... ttctgcatagCTTCTATTTCCAACAGGAGATGCTGCACGCCCATTCTCTATGCTTGGGCTT
EST: TGTTATGGTCAGTGTTGCAAAATCATTTGATGCACCGATAAAG CTTCTATTTCCAACAGGAGATGCTGCACGCCCATTCTCTATGCTTGGGCTTEST: gi|87031167|gb|CI259747.1|CI259747
genomic: TGTTATGGTCAGTGTTGCAAAATCATTTGATGCACCGATAAAGgttagtgttc ... ttctgcatagCTTCTATTTCCAACAGGAGATGCTGCACGCCCATTCTCTATGCTTGGGCTT
EST: TGCACCGATAAAG CTTCTATTTCCAACAGGAGATGCTGCACGCCCATTCTCTATGCTTGGGCTTEST: gi|29660567|gb|CB656842.1|CB656842
genomic: TGCACCGATAAAGgttagtgttc ... ttctgcatagCTTCTATTTCCAACAGGAGATGCTGCACGCCCATTCTCTATGCTTGGGCTT
EST: TCACTCCTGTTATGGTCAGTGTTGCAAAATCATTTGATGCACCGATAAAG CTTCTATTTCCAACAGGAGATGCTGCACGCCCATTCTCTATGCTTGGGCTT
genomic: TCACTCCTGTTATGGTCAGTGTTGCAAAATCATTTGATGCACCGATAAAGgttagtgttc ... ttctgcatagCTTCTATTTCCAACAGGAGATGCTGCACGCCCATTCTCTATGCTTGGGCTT
tctttttctttttacaaaaaaaggctaatctggttatccccttttttctgcatagCTTCTATTTCCAACAGGAGATGCTGCACGCCCATTCTCTATGCTTGGGCTTGGTGACATTGTGATACCTG
ggctaat putative branch site (score: 25)
tctggttatccccttt CT-rich tract
ttctttttacaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgttctttataagtgattttgactcttgttttgatacaaaatgtctttttctttttacaaaaaaaggctaatctggttatccccttttttctgcatagCTTCTATTTCCAACAGGAGATGCTGCACGCCCATTCTCTATGCTTGGGCTTGGTGACATTGTGATACCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC