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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcatcacgacacacactctgaaatggtaatctttactttgagacgttcttactacattttctttaatgcagGACTTCGGAGTCTTTTTCACCCATATGCCTTCCAAGATACAATTCTATGGCTTTCTTATATGCTTATGTTCATTTTTTTGAT

Basic information

species Oryza sativa
transcript LOC_Os01g74460.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g74460.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G179732_T02 (Zea mays), 3'ss of exon 1
gtaatcatcacgacacacactctgaaatggta-atctttactttgag--acgttcttactacattttctttaatgcagGACTTCGGAGTCTTTTTCACCCATATGCCTTCCAAGATACAATTCTATGGCTTTCTTATATGCTTATGTTCATTTTTTTGAT
    | |||| |||| |  ||||||||||    || |  || ||||   | |||||||| |  || | ||| |||||| ||||| |||||||||  |||||||||  | |||||||||||| ||||||| | |||  |||||||||||||||||||||| 
---gtaatcatgacata--ctctgaaatgaaggatttgaaccttgaataatgttcttac-agtttgttttttatgcagAACTTCAGAGTCTTTTGTACCCATATGTTTGCCAAGATACAATCCTATGGCCTACTTGCATGCTTATGTTCATTTTTTTGAC

upper sequence: LOC_Os01g74460.2 (Oryza sativa), 3'ss of exon 8
lower sequence: Vv06s0004g02820.t01 (Vitis vinifera), 3'ss of exon 8
----------------------gtaatcatcacgacacacactctgaaatggt--aatctttactttgagacgt--tcttactacattttctttaatgcagGACTTCGGAGTCTTTTTCACCCATATGCCTTCCAAGATACAATTCTATGGCTTTCTTATATGCTTATGTTCATTTTTTTGAT
                      |   | |||  |    |      |   ||||  ||  | |   | |||  ||  ||||  | |||   ||| | |||||||| || || ||||| ||||| || ||||| |||||||| ||| | ||||| || |||||||||||||| |||| | |||||
atatccttactctgttgaaatggacttaatcttgttgtatgggtggttgtggttgaacttgtttgtggagttgtaatcttgttccatgggcttca-tgcagGACATCCGAATCTTTCTCACCAATTTGCCTGCCAAGATATAATCCCATGGCATTTTTATATGCTTATGTCCATTATCTTGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgaaatggtaatctttactttgagacgttcttactacattttctttaatgcagGACTTCGGAGTCTTTTTCACCCATATGCCTTCCAAGATACAATTCTATGGCTTTCTTATATGCTTATGTTCATTTTTTTGAT
                                      cattttcttt  CT-rich tract
                                    tacattttctttaat  TA-rich tract