1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tcgttgattactgcatcttggccacttagtgcatgtacatgtacttagacagtgctactatcttcttgaattgagtattttctttaatggggtaaaatagACAAGAAGAATGAGAATAAGGAGGTGGCTGTCAACGACTTCATGCCTGCCACTTCTGCTTATGAGACCATACGCCATTCCAT
species | Oryza sativa |
transcript | LOC_Os01g74350.1 |
intron # | 8 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: GGACCTCCCACCTCACCGCTTAGCTGAAATCAGGCGTTTCTTCGAGGACT ACAAGAAGAATGAGAATAAGGAGGTGGCTGTCAACGACTTCATGCCTGCCAEST: gi|88510233|gb|CI437739.1|CI437739
genomic: GGACCTCCCACCTCACCGCTTAGCTGAAATCAGGCGTTTCTTCGAGGACTgtatcctttt ... ggtaaaatagACAAGAAGAATGAGAATAAGGAGGTGGCTGTCAACGACTTCATGCCTGCCA
EST: GGACCTCCCACCTCACCGCTTAGCTGAAATCAGGCGTTTCTTCGAGGACT ACAAGAAGAATGAGAATAAGGAGGTGGCTGTCAACGACTTCATGCCTGCCAEST: gi|29621784|gb|CB626795.1|CB626795
genomic: GGACCTCCCACCTCACCGCTTAGCTGAAATCAGGCGTTTCTTCGAGGACTgtatcctttt ... ggtaaaatagACAAGAAGAATGAGAATAAGGAGGTGGCTGTCAACGACTTCATGCCTGCCA
EST: GGACCTCCCACCTCACCGCTTAGCTGAAATCAGGCGTTTCTTCGAGGACT ACAAGAAGAATGAGAATAAGGAGGTGGCTGTCAACGACTTCATGCCTGCCAEST: gi|88515599|gb|CI443253.1|CI443253
genomic: GGACCTCCCACCTCACCGCTTAGCTGAAATCAGGCGTTTCTTCGAGGACTgtatcctttt ... ggtaaaatagACAAGAAGAATGAGAATAAGGAGGTGGCTGTCAACGACTTCATGCCTGCCA
EST: GGACCTCCCACCTCACCGCTTAGCTGAAATCAGGCGTTTCTTCGAGGACT ACAAGAAGAATGAGAATAAGGAGGTGGCTGTCAACGACTTCATGCCTGCCAEST: gi|88486325|gb|CI423596.1|CI423596
genomic: GGACCTCCCACCTCACCGCTTAGCTGAAATCAGGCGTTTCTTCGAGGACTgtatcctttt ... ggtaaaatagACAAGAAGAATGAGAATAAGGAGGTGGCTGTCAACGACTTCATGCCTGCCA
EST: GGACCTCCCACCTCACCGCTTAGCTGAAATCAGGCGTTTCTTCGAGGACT ACAAGAAGAATGAGAATAAGGAGGTGGCTGTCAACGACTTCATGCCTGCCAEST: gi|88485439|gb|CI422710.1|CI422710
genomic: GGACCTCCCACCTCACCGCTTAGCTGAAATCAGGCGTTTCTTCGAGGACTgtatcctttt ... ggtaaaatagACAAGAAGAATGAGAATAAGGAGGTGGCTGTCAACGACTTCATGCCTGCCA
EST: GGACCTCCCACCTCACCGCTTAGCTGAAATCAGGCGTTTCTTCGAGGACT ACAAGAAGAATGAGAATAAGGAGGTGGCTGTCAACGACTTCATGCCTGCCA
genomic: GGACCTCCCACCTCACCGCTTAGCTGAAATCAGGCGTTTCTTCGAGGACTgtatcctttt ... ggtaaaatagACAAGAAGAATGAGAATAAGGAGGTGGCTGTCAACGACTTCATGCCTGCCA
tagacagtgctactatcttcttgaattgagtattttctttaatggggtaaaatagACAAGAAGAATGAGAATAAGGAGGTGGCTGTCAACGACTTCATGCCTGCCACTTCTGCTTATGAGACCATACGCCATTCCAT
ttctttaat putative branch site
agtattttctttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgttgattactgcatcttggccacttagtgcatgtacatgtacttagacagtgctactatcttcttgaattgagtattttctttaatggggtaaaatagACAAGAAGAATGAGAATAAGGAGGTGGCTGTCAACGACTTCATGCCTGCCACTTCTGCTTATGAGACCATACGCCATTCCAT
- - - - tactgca
- - - - - - - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - - -catgtac