1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgctcactatgcctggatccatgtgcttaagaggaataatgctaaagctgctttaccaaactaacgcgcctgaactgaattccctccagCTGGGATTAATGACGCAAAGGAGCATGCTGAAGAACTTGCAGAGCTACTGCATACATGTGGCGGTGGTTATCATGTGAACCTAATTCCTTATAATCCGAT
species | Oryza sativa |
transcript | LOC_Os01g74190.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTACTTCCTCG-AACTGGACGAAGGGTATCCTTCNAGTACACTCTGCTAG CTGGGATTAATGACGCAAAGGAGCATGCTGAAGAACTTGCAGAGCTACTGCEST: gi|87015982|gb|CI279734.1|CI279734
genomic: TTACTTCCTCGAAACTGGACGAAGGGTATCCTTCGAGTACACTCTGCTAGgtatgctcac ... ttccctccagCTGGGATTAATGACGCAAAGGAGCATGCTGAAGAACTTGCAGAGCTACTGC
EST: TTACTTCCTCGAAACTGGACGAAGGGTATCCTTCGAGTACACTCTGCTAG CTGGGATTAATGACGCAAAGGAGCATGCTGAAGAACTTGCAGAGCTACTGCEST: gi|33684141|gb|CF312380.1|CF312380
genomic: TTACTTCCTCGAAACTGGACGAAGGGTATCCTTCGAGTACACTCTGCTAGgtatgctcac ... ttccctccagCTGGGATTAATGACGCAAAGGAGCATGCTGAAGAACTTGCAGAGCTACTGC
EST: TTACTTCCTCGAAACTGGACGAAGGGTATCCTTCGAGTACACTCTGCTAG CTGGGATTAATGACGCAAAGGAGCATGCTGAAGAACTTGCAGAGCTACTGNEST: gi|88829806|gb|CI004844.1|CI004844
genomic: TTACTTCCTCGAAACTGGACGAAGGGTATCCTTCGAGTACACTCTGCTAGgtatgctcac ... ttccctccagCTGGGATTAATGACGCAAAGGAGCATGCTGAAGAACTTGCAGAGCTACTG-
EST: TTACTTCCTCGAAACTGGACGAAGGGTATCCTTCGAGTACACTCTGCTAG CTGGGATTAATGACGCAAAGGAGCATGCTGAAGAACTTGCAGAGCTACTGCEST: gi|8859557|gb|AU096875.1|AU096875
genomic: TTACTTCCTCGAAACTGGACGAAGGGTATCCTTCGAGTACACTCTGCTAGgtatgctcac ... ttccctccagCTGGGATTAATGACGCAAAGGAGCATGCTGAAGAACTTGCAGAGCTACTGC
EST: TTACTTCCTCGAAACTGGACGAAGGGTATCCTTCGAGTACACTCTGCTAG CTGGGATTAATGACGCAAAGGAGCATGCTGAAGAACTTGCAGAGCTACTGCEST: gi|89193096|gb|CI050394.1|CI050394
genomic: TTACTTCCTCGAAACTGGACGAAGGGTATCCTTCGAGTACACTCTGCTAGgtatgctcac ... ttccctccagCTGGGATTAATGACGCAAAGGAGCATGCTGAAGAACTTGCAGAGCTACTGC
EST: ACGAAGGGTATCCTTCGAGTACACTCTGCTAG CTGGGATTAATGACGCAAAGGAGCATGCTGAAGAACTTGCAGAGCTACTGCEST: gi|33381455|gb|CF196798.1|CF196798
genomic: ACGAAGGGTATCCTTCGAGTACACTCTGCTAGgtatgctcac ... ttccctccagCTGGGATTAATGACGCAAAGGAGCATGCTGAAGAACTTGCAGAGCTACTGC
EST: TTACTTCCTCGAAACTGGACGAAGGGTATCCTTCGAGTACACTCTGCTAG CTGGGATTAATGACGCAAAGGAGCATGCTGAAGAACTTGCAGAGCTACTGCEST: gi|8858615|gb|AU095933.1|AU095933
genomic: TTACTTCCTCGAAACTGGACGAAGGGTATCCTTCGAGTACACTCTGCTAGgtatgctcac ... ttccctccagCTGGGATTAATGACGCAAAGGAGCATGCTGAAGAACTTGCAGAGCTACTGC
EST: TTACTTCCTCGAAACTGGACGAAGGGTATCCTTCGAGTACACTCTGCTAG CTGGGATTAATGACGCAAAGGAGCATGCTGAAGAACTTGCAGAGCTACTGCEST: gi|86540664|gb|CI180870.1|CI180870
genomic: TTACTTCCTCGAAACTGGACGAAGGGTATCCTTCGAGTACACTCTGCTAGgtatgctcac ... ttccctccagCTGGGATTAATGACGCAAAGGAGCATGCTGAAGAACTTGCAGAGCTACTGC
EST: TTACTTCCTCGAAACTGGACGAAGGGTATCCTTCGAGTACACTCTGCTAG CTGGGATTAATGACGCAAAGGAGCATGCTGCAGAACTTGCAGAGCTACTGCEST: gi|86597829|gb|CI276615.1|CI276615
genomic: TTACTTCCTCGAAACTGGACGAAGGGTATCCTTCGAGTACACTCTGCTAGgtatgctcac ... ttccctccagCTGGGATTAATGACGCAAAGGAGCATGCTGAAGAACTTGCAGAGCTACTGC
EST: TTACTTCCTCGAAACTGGACGAAGGGTATCCTTCGAGTACACTCTGCTAG CTGGGATTAATGACGCAAAGGAGCATGCTGAAGAACTTGCAGAGCTACTGCEST: gi|86498774|gb|CI141407.1|CI141407
genomic: TTACTTCCTCGAAACTGGACGAAGGGTATCCTTCGAGTACACTCTGCTAGgtatgctcac ... ttccctccagCTGGGATTAATGACGCAAAGGAGCATGCTGAAGAACTTGCAGAGCTACTGC
EST: TTACTTCCTCGAAACTGGACGAAGGGTATCCTTCGAGTACACTCTGCTAG CTGGGATTAATGACGCAAAGGAGCATGCTGAAGAACTTGCAGAGCTACTGCEST: gi|86251798|gb|CI018990.1|CI018990
genomic: TTACTTCCTCGAAACTGGACGAAGGGTATCCTTCGAGTACACTCTGCTAGgtatgctcac ... ttccctccagCTGGGATTAATGACGCAAAGGAGCATGCTGAAGAACTTGCAGAGCTACTGC
EST: CTTCGAGTACACTCTGCTAG CTGGGATTAATGACGCAAAGGAGCATGCTGAAGAACTTGCAGAGCTACTGC
genomic: CTTCGAGTACACTCTGCTAGgtatgctcac ... ttccctccagCTGGGATTAATGACGCAAAGGAGCATGCTGAAGAACTTGCAGAGCTACTGC
aataatgctaaagctgctttaccaaactaacgcgcctgaactgaattccctccagCTGGGATTAATGACGCAAAGGAGCATGCTGAAGAACTTGCAGAGCTACTGCATACATGTGGCGGTGGTTATCATGTGAACCTAATTCCTTATAATCCGAT
aactaac putative branch site (score: 9)
ttccctcc putative PPT
aaactaa TA-rich tract