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gtatgctttcgatcttcattgaacaatttctcaattgcagatttctggtgattctgctgacaggatttacaatgcagGTACATTAAACTTGTCAAGAAATATCAGCTAGAAATCTCACAACCTGGTTTAGAGCCAGATCGGGGATTGACATGGCAGATGACCAAAAGAAGAGGGGAT
species | Oryza sativa |
transcript | LOC_Os01g73970.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGAGCATTTTAACGCAGAGGA GTACATTAAACTTGTCAAGAAATATCAGCTAGAAGTCTCACAACCTGGTTTEST: gi|58694661|gb|CK083348.1|CK083348
genomic: TGAGCATTTTAACGCAGAGGAgtatgctttc ... tacaatgcagGTACATTAAACTTGTCAAGAAATATCAGCTAGAAATCTCACAACCTGGTTT
EST: ATATTTATCTGGGACGAGGATCTTGGAGTTGAGCATTTTAACGCAGAGGA GTACATTAAACTTGTCAAGAAATATCAGCTAGAAATCTCACAACCTGGTTTEST: gi|29641984|gb|CB646991.1|CB646991
genomic: ATATTTATCTGGGACGAGGATCTTGGAGTTGAGCATTTTAACGCAGAGGAgtatgctttc ... tacaatgcagGTACATTAAACTTGTCAAGAAATATCAGCTAGAAATCTCACAACCTGGTTT
EST: ATATTTATCTGGGACGAGGATCTTGGAGTTGAGCATTTTAACGCAGAGGA GTACATTAGACTTGTCAAGAAATATCAGCTAGAAATCTCACAACEST: gi|29663566|gb|CB659841.1|CB659841
genomic: ATATTTATCTGGGACGAGGATCTTGGAGTTGAGCATTTTAACGCAGAGGAgtatgctttc ... tacaatgcagGTACATTAAACTTGTCAAGAAATATCAGCTAGAAATCTCACAAC
EST: ATATTTATCTGGGACGAGGATCTTGGAGTTGAGCATTTTAACGCAGAGGA GTACATTAAACTTGTCAAGAAATATCAGCTAGAAATCTCACAACCTGGTTTEST: gi|29641985|gb|CB646992.1|CB646992
genomic: ATATTTATCTGGGACGAGGATCTTGGAGTTGAGCATTTTAACGCAGAGGAgtatgctttc ... tacaatgcagGTACATTAAACTTGTCAAGAAATATCAGCTAGAAATCTCACAACCTGGTTT
EST: ATATTTATCTGGGACGAGGATCTTGGAGTTGAGCATTTTAACGCAGAGGA GTACATTAAACTTGTCAAGAAATATCAGCTAGAAATCTCACAACCTGGTGT
genomic: ATATTTATCTGGGACGAGGATCTTGGAGTTGAGCATTTTAACGCAGAGGAgtatgctttc ... tacaatgcagGTACATTAAACTTGTCAAGAAATATCAGCTAGAAATCTCACAACCTGGTTT
acaatttctcaattgcagatttctggtgattctgctgacaggatttacaatgcagGTACATTAAACTTGTCAAGAAATATCAGCTAGAAATCTCACAACCTGGTTTAGAGCCAGATCGGGGATTGACATGGCAGATGACCAAAAGAAGAGGGGAT
tgctgac putative branch site (score: 22)
atttacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctttcgatcttcattgaacaatttctcaattgcagatttctggtgattctgctgacaggatttacaatgcagGTACATTAAACTTGTCAAGAAATATCAGCTAGAAATCTCACAACCTGGTTTAGAGCCAGATCGGGGATTGACATGGCAGATGACCAAAAGAAGAGGGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG