1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgaagaagattcacttgctatacttggctgagcactgtagttgataaatctgaccatggattatgctgtgtttatcagGAGATTATTGATCATCTGAAGCACATATGCCCTGCCCATATCTATGCAACATCCATGTCACCTCCAGCTGTTCAGCAGGTCATTTCTGCAATAAAAGTTA
species | Oryza sativa |
transcript | LOC_Os01g70380.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CATTTACTAAATCATTTGGATCATGCGGAGGTTACATTGCAGCATCAAAA GAGATTATTGATCATCTGAAGCACATATGCCCTGCCCATATCTATGCAACAEST: gi|58606416|gb|CK034449.1|CK034449
genomic: CATTTACTAAATCATTTGGATCATGCGGAGGTTACATTGCAGCATCAAAAgtatgaagaa ... tgtttatcagGAGATTATTGATCATCTGAAGCACATATGCCCTGCCCATATCTATGCAACA
EST: CA-TGACTAAATCATTTGGATCATGCGGAGGTTACATTGCAGCATCAAAA GAGATTATTGATCATCTGAAGCACATATGCCCTGCCCATATCTATGCAACAEST: gi|58666876|gb|CK055562.1|CK055562
genomic: CATTTACTAAATCATTTGGATCATGCGGAGGTTACATTGCAGCATCAAAAgtatgaagaa ... tgtttatcagGAGATTATTGATCATCTGAAGCACATATGCCCTGCCCATATCTATGCAACA
EST: CATTTACTAAATCATTTGGATCATGCGGAGGTTACATTGCAGCATCAAAA GAGATTATTGATCATCTGAAGCACATATGCCCTGCCCATATCTATGCAACA
genomic: CATTTACTAAATCATTTGGATCATGCGGAGGTTACATTGCAGCATCAAAAgtatgaagaa ... tgtttatcagGAGATTATTGATCATCTGAAGCACATATGCCCTGCCCATATCTATGCAACA
ttggctgagcactgtagttgataaatctgaccatggattatgctgtgtttatcagGAGATTATTGATCATCTGAAGCACATATGCCCTGCCCATATCTATGCAACATCCATGTCACCTCCAGCTGTTCAGCAGGTCATTTCTGCAATAAAAGTTA
atctgac putative branch site (score: 24)
ttgataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaagaagattcacttgctatacttggctgagcactgtagttgataaatctgaccatggattatgctgtgtttatcagGAGATTATTGATCATCTGAAGCACATATGCCCTGCCCATATCTATGCAACATCCATGTCACCTCCAGCTGTTCAGCAGGTCATTTCTGCAATAAAAGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT