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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtcaccagtcatgtcctcactctgtttcagcttagccatgtccccactctgtttcatcttctgtaacttgtaactaaccaaaaacatccgctctccttttgcagGGCGTCTTCATCAATCCTGCTCTTGTTGAGCCTTTCGGTCTCACCCTGATCGAG

Basic information

species Oryza sativa
transcript LOC_Os01g69030.4
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g69030.4 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G140107_T01 (Zea mays), 3'ss of exon 8
gtctgtcaccagtcatgtcctcactctgttt-cagcttagccatgtccccactctgtttcatcttctgtaacttgtaactaaccaaaaacatccgctctccttttgcagGGCGTCTTCATCAATCCTGCTCTTGTTGAGCCTTTCGGTCTCACCCTGATCGAG
                           |||| | || || | | | |||  |  ||    | |||    || |   |   ||||| ||      |||| |    ||||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||||
---------------------------gtttgctgcata-caacgacccttcattg----agctttgacaattcacactcaaccataactgattgctccc----tgcagGGTGTCTTCATCAACCCTGCTCTCGTTGAGCCGTTCGGTCTCACCCTGATCGAG

upper sequence: LOC_Os01g69030.4 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM5G875238_T01 (Zea mays), 3'ss of exon 7
gtctgtcaccagtcatgtcctcactctgtttcagcttagccatgtccccactctgt-ttcatcttctgtaacttgtaactaaccaaaaacatccgctctccttttgcagGGCGTCTTCATCAATCCTGCTCTTGTTGAGCCTTTCGGTCTCACCCTGATCGAG
                                  ||    |||  | | || ||   || | |||    || |   |   ||||| ||      |||| |    ||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||
--------------------------------gtctgctgcataccacgacccttcattgagctttgacaagtcacactcaaccataactgattgctccc----tgcagGGCGTCTTCATCAACCCTGCTCTCGTTGAGCCGTTTGGTCTCACCCTGATCGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttcatcttctgtaacttgtaactaaccaaaaacatccgctctccttttgcagGGCGTCTTCATCAATCCTGCTCTTGTTGAGCCTTTCGGTCTCACCCTGATCGAG
                      aactaac  putative branch site (score: 1)
                                   catccgctctcctttt  putative PPT
                              aaaaacat  TA-rich tract