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gtatgaatgttgatctccccttttgtttgatatctatgaatatgtatttcaattttcaactagtagtctgcttgacacgaaatatgcatcttcagATACAGGGGAAAGCAGCTCTTCAGAAACCCTTACCAGTGCCATTGACACAGTAGAAGATGGTGAAACATCTGTATCGCGGTCCAATAATGTGGCTGATTT
species | Oryza sativa |
transcript | LOC_Os01g68380.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGAGATGCATCAACTGCAACAGAAGATCTAG ATACAGGGGAAAGCAGCTCTTCAGAAACCCTTACCAGTGCCATTGACACAGEST: gi|29670331|gb|CB666606.1|CB666606
genomic: AAGAGATGCATCAACTGCAACAGAAGATCTAGgtatgaatgt ... gcatcttcagATACAGGGGAAAGCAGCTCTTCAGAAACCCTTACCAGTGCCATTGACACAG
EST: TGCAACAGAAGATCTAG ATACAGGGGAAAGCAGCTCTTCAGAAACCCTTACCAGTGCCATTGACACAGEST: gi|29672335|gb|CB668610.1|CB668610
genomic: TGCAACAGAAGATCTAGgtatgaatgt ... gcatcttcagATACAGGGGAAAGCAGCTCTTCAGAAACCCTTACCAGTGCCATTGACACAG
EST: GAGATGCATCAACTGCAACAGAAGATCTAG ATACAGGGGAAAGCAGCTCTTCAGAAACCCTTACCAGTGCCATTGACACAGEST: gi|58682563|gb|CK071250.1|CK071250
genomic: GAGATGCATCAACTGCAACAGAAGATCTAGgtatgaatgt ... gcatcttcagATACAGGGGAAAGCAGCTCTTCAGAAACCCTTACCAGTGCCATTGACACAG
EST: AAAACCTTCAGCTGATAAAAGAGATGCATCAACTGCAACAGAAGATC--- -T--AGGGGAAAGCAGCTCTTCAGAAACCCTTACCAGTGCCATTGACACAGEST: gi|66924680|gb|CX111528.1|CX111528
genomic: AAAACCTTCAGCTGATAAAAGAGATGCATCAACTGCAACAGAAGATCTAGgtatgaatgt ... gcatcttcagATACAGGGGAAAGCAGCTCTTCAGAAACCCTTACCAGTGCCATTGACACAG
EST: AAAACCTTCAGCTGATAAAAGAGATGCATCAACTGCAACAGAAGATCTAG ATACAGGGGAAAGCAGCTCTTCAGAAACCCTTACCAGTGCCATTGACACAGEST: gi|29644364|gb|CB649371.1|CB649371
genomic: AAAACCTTCAGCTGATAAAAGAGATGCATCAACTGCAACAGAAGATCTAGgtatgaatgt ... gcatcttcagATACAGGGGAAAGCAGCTCTTCAGAAACCCTTACCAGTGCCATTGACACAG
EST: AAAACCTTCAGCTGATAAAAGAGATGCATCAACTGCAACAGAAGATCTAG ATACAGGGGAAAGCAGCTCTTCAGAAACCCTTACCAGTGCCATTGACACAGEST: gi|29668123|gb|CB664398.1|CB664398
genomic: AAAACCTTCAGCTGATAAAAGAGATGCATCAACTGCAACAGAAGATCTAGgtatgaatgt ... gcatcttcagATACAGGGGAAAGCAGCTCTTCAGAAACCCTTACCAGTGCCATTGACACAG
EST: AAAACCTTCAGCTGATAAAAGAGATGCATCAACTGCAACAGAAGATCTAG ATACAGGGGAAAGCAGCTCTTCAGAAACCCTTACCAGTGCCATTGACACAG
genomic: AAAACCTTCAGCTGATAAAAGAGATGCATCAACTGCAACAGAAGATCTAGgtatgaatgt ... gcatcttcagATACAGGGGAAAGCAGCTCTTCAGAAACCCTTACCAGTGCCATTGACACAG
tatgtatttcaattttcaactagtagtctgcttgacacgaaatatgcatcttcagATACAGGGGAAAGCAGCTCTTCAGAAACCCTTACCAGTGCCATTGACACAGTAGAAGATGGTGAAACATCTGTATCGCGGTCCAATAATGTGGCTGATTT
gcttgac putative branch site (score: 17)
catcttc putative PPT
atttcaattttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaatgttgatctccccttttgtttgatatctatgaatatgtatttcaattttcaactagtagtctgcttgacacgaaatatgcatcttcagATACAGGGGAAAGCAGCTCTTCAGAAACCCTTACCAGTGCCATTGACACAGTAGAAGATGGTGAAACATCTGTATCGCGGTCCAATAATGTGGCTGATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT