1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tggtagaaaaaataccgatttattttcagttgagttggaaatctcttgttcttaggcagggggttcatgtttataatgtatctcttgtttcatgaatcagGAGCTTATACTTCCTTTTGCAATAGTGAGTGAAAAATTCTACAAGCTCAAACGCTGGGAAAATTCTCGTACAACCGCTTGTTTTCTACTTGTGGTTTATA
species | Oryza sativa |
transcript | LOC_Os01g64870.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGTTGCCGCTACTATTGAAGGTATTCCAAGCAACATTGACCTCTTCAAG GAGCTTATACTTCCTTTTGCAATAGTGAGTGAAAAATTCTACAAGCTCAAAEST: gi|29676306|gb|CB672581.1|CB672581
genomic: TTGTTGCCGCTACTATTGAAGGTATTCCAAGCAACATTGACCTCTTCAAGgtacatgtct ... catgaatcagGAGCTTATACTTCCTTTTGCAATAGTGAGTGAAAAATTCTACAAGCTCAAA
EST: TTGTTGCCGCTACTATTGAAGGTATTCCAAGCAACATTGACGTCTTCAAG GAGCTTATACTTCTTTTTGCAATAGTGAGTGAAAAATTCTACAAGCTCAACEST: gi|29640468|gb|CB645477.1|CB645477
genomic: TTGTTGCCGCTACTATTGAAGGTATTCCAAGCAACATTGACCTCTTCAAGgtacatgtct ... catgaatcagGAGCTTATACTTCCTTTTGCAATAGTGAGTGAAAAATTCTACAAGCTCAAA
EST: TTGTTGCCGCTACTATTGAAGGTATTCCCAGCAACATTGACCTCTTCAAG GAGCTTATACTTCCTTTTGCAATAGTGAGTGAAAAATTCTACCAGCTCAAAEST: gi|29623236|gb|CB628247.1|CB628247
genomic: TTGTTGCCGCTACTATTGAAGGTATTCCAAGCAACATTGACCTCTTCAAGgtacatgtct ... catgaatcagGAGCTTATACTTCCTTTTGCAATAGTGAGTGAAAAATTCTACAAGCTCAAA
EST: TTGTTGCCGCTACTATTGAAGGTATTCCAAGCAACATTGACCTCTTCAAG GAGCTTATACTTCCTTTTGCAATAGTGAGTGAAAAATTCTACAAGCTCAAAEST: gi|29640469|gb|CB645478.1|CB645478
genomic: TTGTTGCCGCTACTATTGAAGGTATTCCAAGCAACATTGACCTCTTCAAGgtacatgtct ... catgaatcagGAGCTTATACTTCCTTTTGCAATAGTGAGTGAAAAATTCTACAAGCTCAAA
EST: ATTGAAGGTATTCCAAGCAACATTGACCTCTTCAAG GAGCTTATACTTCCTTTTGCAATAGTGAGTGAAAAATTCTACAAGCTCAAAEST: gi|29628912|gb|CB633923.1|CB633923
genomic: ATTGAAGGTATTCCAAGCAACATTGACCTCTTCAAGgtacatgtct ... catgaatcagGAGCTTATACTTCCTTTTGCAATAGTGAGTGAAAAATTCTACAAGCTCAAA
EST: AAGCAACATTGACCTCTTCAAG GAGCTTATACTTCCTTTTGCAATAGTGAGTGAAAAATTCTACAAGCTCAAAEST: gi|29678280|gb|CB674555.1|CB674555
genomic: AAGCAACATTGACCTCTTCAAGgtacatgtct ... catgaatcagGAGCTTATACTTCCTTTTGCAATAGTGAGTGAAAAATTCTACAAGCTCAAA
EST: TTGTTGCCGCTACTATTGAAGGTATTCCAAGCAACATTGACCTCTTCAAG GAGCTTATACTTCCTTTTGCAATAGTGAGTGAAAAATTCTACAAGCTCAAA
genomic: TTGTTGCCGCTACTATTGAAGGTATTCCAAGCAACATTGACCTCTTCAAGgtacatgtct ... catgaatcagGAGCTTATACTTCCTTTTGCAATAGTGAGTGAAAAATTCTACAAGCTCAAA
ttgttcttaggcagggggttcatgtttataatgtatctcttgtttcatgaatcagGAGCTTATACTTCCTTTTGCAATAGTGAGTGAAAAATTCTACAAGCTCAAACGCTGGGAAAATTCTCGTACAACCGCTTGTTTTCTACTTGTGGTTTATA
tctcttgtttc CT-rich tract
atgtttataatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtagaaaaaataccgatttattttcagttgagttggaaatctcttgttcttaggcagggggttcatgtttataatgtatctcttgtttcatgaatcagGAGCTTATACTTCCTTTTGCAATAGTGAGTGAAAAATTCTACAAGCTCAAACGCTGGGAAAATTCTCGTACAACCGCTTGTTTTCTACTTGTGGTTTATA
- - -gaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttcatg