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gtaagtgccatgtcacatgtatgcatactttttatacactacagttatggtaaaatatgacacctagtgcaattggcttgcagTTCAAGGAAATGGTAATCTCCACCCGGAAGGAAATGGAGGGAAAGATTGACTCCATGAGAATCTTAGACAACTCAAATCCTCAGAAGCCAGTAGTGCGCA
species | Oryza sativa |
transcript | LOC_Os01g63270.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGAAATTACTTCCACGACACATGGAAATTATCGAGGAAATTGACAAGCGG TTCAAAGAAATGGTAATCTCCACCCGGAAGGAAATGGAGGGAAAGATTGACEST: gi|29635801|gb|CB640810.1|CB640810
genomic: GGAAATTACTTCCACGACACATGGAAATTATCGAGGAAATTGACAAGCGGgtaagtgcca ... tggcttgcagTTCAAGGAAATGGTAATCTCCACCCGGAAGGAAATGGAGGGAAAGATTGAC
EST: GGAAATTACTTCCACGACACATGGAAATTATCGAGGAAATTGACAAGCGG TTCAAGGAAATGGTAATCTCCACCCGGAAGGAAATGGAGGGAAAGATTGACEST: gi|58688682|gb|CK077369.1|CK077369
genomic: GGAAATTACTTCCACGACACATGGAAATTATCGAGGAAATTGACAAGCGGgtaagtgcca ... tggcttgcagTTCAAGGAAATGGTAATCTCCACCCGGAAGGAAATGGAGGGAAAGATTGAC
EST: GGAAATTACTTCCACGACACATGGAAATTATCGAGGAAATTGACAAGCGG TTCAAAGAAATGGTAATCTCCACCCGGAAGGAAATGGAGGGAAAGATTGACEST: gi|29623647|gb|CB628658.1|CB628658
genomic: GGAAATTACTTCCACGACACATGGAAATTATCGAGGAAATTGACAAGCGGgtaagtgcca ... tggcttgcagTTCAAGGAAATGGTAATCTCCACCCGGAAGGAAATGGAGGGAAAGATTGAC
EST: GGAAATTACTTCCACGACACATGGAAATTATCGAGGAAATTGACAAGCGG TTCAAAGAAATGGTAATCTCCACCCGGAAGGAAATGGAGGGAAAGATTGAC
genomic: GGAAATTACTTCCACGACACATGGAAATTATCGAGGAAATTGACAAGCGGgtaagtgcca ... tggcttgcagTTCAAGGAAATGGTAATCTCCACCCGGAAGGAAATGGAGGGAAAGATTGAC
tttttatacactacagttatggtaaaatatgacacctagtgcaattggcttgcagTTCAAGGAAATGGTAATCTCCACCCGGAAGGAAATGGAGGGAAAGATTGACTCCATGAGAATCTTAGACAACTCAAATCCTCAGAAGCCAGTAGTGCGCA
ttatggtaaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgccatgtcacatgtatgcatactttttatacactacagttatggtaaaatatgacacctagtgcaattggcttgcagTTCAAGGAAATGGTAATCTCCACCCGGAAGGAAATGGAGGGAAAGATTGACTCCATGAGAATCTTAGACAACTCAAATCCTCAGAAGCCAGTAGTGCGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC