1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcatgctcattcctttctacgttcttgactatgctgctaaagataccactgagttctggataaacagtgcgtctaactgtagtatctctgttgttaccagATGTAACATCTCAAGTATCTTGCTGGAGATGGATCGAATACTCAGACCAGGCGGTAGGGCTTACATTCGTGACCTAAAACAAGTTGTACAGGATGTCAAA
species | Oryza sativa |
transcript | LOC_Os01g62800.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACATATGATCTGCTCCATGCGTTTAGCCTATTCTCGAAGGAACAGAAAAG ATGTAACATCTCAAGTATCTTGCTGGAGATGGATCGAATACTCAGACCAGGEST: gi|58595680|gb|CK006208.1|CK006208
genomic: ACATATGATCTGCTCCATGCGTTTAGCCTATTCTCGAAGGAACAGAAAAGgtagcagttc ... ttgttaccagATGTAACATCTCAAGTATCTTGCTGGAGATGGATCGAATACTCAGACCAGG
EST: ACATATGATCTGCTCCATGCGTTTAGCCTATTCTCGAAGGAACAGAAAAG ATGTAACATCTCAAGTATCTTGCTGGAGATGGATCGAATACTCAGACCAGGEST: gi|116875004|gb|EC365512.1|EC365512
genomic: ACATATGATCTGCTCCATGCGTTTAGCCTATTCTCGAAGGAACAGAAAAGgtagcagttc ... ttgttaccagATGTAACATCTCAAGTATCTTGCTGGAGATGGATCGAATACTCAGACCAGG
EST: ACATATGATCTGCTCCATGCGTTTAGCCTATTCTCGAAGGAACAGAAAAG ATGTAACATCTCAAGTATCTTGCTGGAGATGGATCGAATACTCAGACCAGGEST: gi|29616535|gb|CB621547.1|CB621547
genomic: ACATATGATCTGCTCCATGCGTTTAGCCTATTCTCGAAGGAACAGAAAAGgtagcagttc ... ttgttaccagATGTAACATCTCAAGTATCTTGCTGGAGATGGATCGAATACTCAGACCAGG
EST: ACATATGATCTGCTCCATGCGTTTAGCCTATTCTCGAAGGAACAGAAAAG ATGTAACATCTCAAGTATCTTGCTGGAGATGGATCGAATACTCAGACCAGGEST: gi|86835055|gb|CI346535.1|CI346535
genomic: ACATATGATCTGCTCCATGCGTTTAGCCTATTCTCGAAGGAACAGAAAAGgtagcagttc ... ttgttaccagATGTAACATCTCAAGTATCTTGCTGGAGATGGATCGAATACTCAGACCAGG
EST: GAACAGAAAAG ATGTAACATCTCAAGTATCTTGCT-GAGATGGATCGAATACTCAGACCAGGEST: gi|88991550|gb|CI019728.1|CI019728
genomic: GAACAGAAAAGgtagcagttc ... ttgttaccagATGTAACATCTCAAGTATCTTGCTGGAGATGGATCGAATACTCAGACCAGG
EST: ACATATGATCTGCTCCATGCGTTTAGCCTATTCTCGAAGGAACAGAAAAG ATGTAACATCTCAAGTATCTTGCTGGAGATGGATCGAATACTCAGACCAGG
genomic: ACATATGATCTGCTCCATGCGTTTAGCCTATTCTCGAAGGAACAGAAAAGgtagcagttc ... ttgttaccagATGTAACATCTCAAGTATCTTGCTGGAGATGGATCGAATACTCAGACCAGG
ccactgagttctggataaacagtgcgtctaactgtagtatctctgttgttaccagATGTAACATCTCAAGTATCTTGCTGGAGATGGATCGAATACTCAGACCAGGCGGTAGGGCTTACATTCGTGACCTAAAACAAGTTGTACAGGATGTCAAA
gtctaac putative branch site (score: 4)
tctctgtt putative PPT
ataaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatgctcattcctttctacgttcttgactatgctgctaaagataccactgagttctggataaacagtgcgtctaactgtagtatctctgttgttaccagATGTAACATCTCAAGTATCTTGCTGGAGATGGATCGAATACTCAGACCAGGCGGTAGGGCTTACATTCGTGACCTAAAACAAGTTGTACAGGATGTCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
-catgctc
- - - - - - - - - - gttcttg
- - - - - - - - - - - - - - - -tgctgct
- - - - - - - - - - - - - - - - - - - aaagatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcgtc