1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagcacaaacaagacaaaatatatgcagacagttatttctgcaagtcgtcatgtaccgtaatggtaatccctcccctcctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTGATCATGGAAATGCTGAGGATATGGTGAAAAGAAACAAATCTGGCCAGC
species | Oryza sativa |
transcript | LOC_Os01g60190.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TATTGAAGCCCACGNTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGNTTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|86902955|gb|CI312332.1|CI312332
genomic: TATTGAAG-CCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|58596168|gb|CK006696.1|CK006696
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|88906094|gb|CI375166.1|CI375166
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: CCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|29679427|gb|CB675702.1|CB675702
genomic: CCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|86535716|gb|CI175922.1|CI175922
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: AGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|33806917|gb|CF329340.1|CF329340
genomic: AGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|88996617|gb|CI389283.1|CI389283
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: AGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|163926901|gb|EG710194.1|EG710194
genomic: AGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: CCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|29658401|gb|CB654676.1|CB654676
genomic: CCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|88261804|gb|CI365380.1|CI365380
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: ATATT-AAGCCACGGTAGTTGC-TGCAAGGCAGCTGACGAAGCCGTTAAG A-TATTTT-GACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|88907011|gb|CI376083.1|CI376083
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: GTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|86853833|gb|CI329279.1|CI329279
genomic: GTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: GGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAAC-AGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|3760295|gb|C97551.1|C97551
genomic: GGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|29677148|gb|CB673423.1|CB673423
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|88906214|gb|CI375286.1|CI375286
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: ATA-TGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|88248915|gb|CI247999.1|CI247999
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|38479186|gb|CF963319.1|CF963319
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|33678746|gb|CF306985.1|CF306985
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|33679927|gb|CF308166.1|CF308166
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|88840190|gb|CI079644.1|CI079644
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: AGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|88828327|gb|CI000436.1|CI000436
genomic: AGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: GCAGCTGACGAAGCCGTTAAG ATTATTTGGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|3766835|gb|AU030945.1|AU030945
genomic: GCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: TATTGAACCCACCGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTTGGACGCGATTGNACAAGTCGGTGGTATTTATCTTGTCACCGNEST: gi|29614143|gb|CB619156.1|CB619156
genomic: TATTGAAGCCA-CGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTA-TTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGC
EST: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|29679469|gb|CB675744.1|CB675744
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|29636842|gb|CB641851.1|CB641851
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|29670487|gb|CB666762.1|CB666762
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|88906594|gb|CI375666.1|CI375666
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: CTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTTTCACCGCTEST: gi|58592702|gb|CF991010.1|CF991010
genomic: CTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|29687456|gb|CB683731.1|CB683731
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|87029588|gb|CI257383.1|CI257383
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|86436645|gb|CI118367.1|CI118367
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: TGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|29616025|gb|CB621037.1|CB621037
genomic: TGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|29687056|gb|CB683331.1|CB683331
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|86870543|gb|CI320639.1|CI320639
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: ATATTGAAGCCACGGTAGTTCCTTCCAAGGCACCTGACGAAGCCGTTAAG ATTATTTTTGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|29687803|gb|CB684078.1|CB684078
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|86834084|gb|CI340223.1|CI340223
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|38469089|gb|CF953220.1|CF953220
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: GTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|27577152|gb|CA999846.1|CA999846
genomic: GTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTEST: gi|58601914|gb|CK012442.1|CK012442
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: CGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: CGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
ttatttctgcaagtcgtcatgtaccgtaatggtaatccctcccctcctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTGATCATGGAAATGCTGAGGATATGGTGAAAAGAAACAAATCTGGCCAGC
taatccctcccctcct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcacaaacaagacaaaatatatgcagacagttatttctgcaagtcgtcatgtaccgtaatggtaatccctcccctcctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTGATCATGGAAATGCTGAGGATATGGTGAAAAGAAACAAATCTGGCCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA