1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tagctactgttgagcatccaacattagcttttgcttcgatttgcaccatcttggtcatcagaatagttctgattccaacttttcaaatgctgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTGGAGGTTGCAAAGAT
species | Oryza sativa |
transcript | LOC_Os01g59600.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTEST: gi|88847361|gb|CI011304.1|CI011304
genomic: GACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: CAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTEST: gi|88976521|gb|CI024666.1|CI024666
genomic: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: GAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTEST: gi|12622989|gb|AU173202.1|AU173202
genomic: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: CTCTGGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTEST: gi|86835538|gb|CI347995.1|CI347995
genomic: CTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: TGCTGCTCTGGGTAAAGGAAGACAGGCTCCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTNCCGGGAAGGCATTGTEST: gi|88381429|gb|CI528409.1|CI528409
genomic: TGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: GGTAAAGGAAGACAGGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTEST: gi|86597380|gb|CI280517.1|CI280517
genomic: GGTAAAGGAAGACA-GGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTEST: gi|33686422|gb|CF314661.1|CF314661
genomic: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: TACAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTEST: gi|88273185|gb|CI388641.1|CI388641
genomic: TACAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: GGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTTTEST: gi|86841716|gb|CI337401.1|CI337401
genomic: GGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTEST: gi|88270098|gb|CI381396.1|CI381396
genomic: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: AAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTEST: gi|29668732|gb|CB665007.1|CB665007
genomic: AAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTEST: gi|88255608|gb|CI354432.1|CI354432
genomic: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: CTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTEST: gi|86836032|gb|CI346125.1|CI346125
genomic: CTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTEST: gi|163920473|gb|EG709578.1|EG709578
genomic: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGC--TCCGAGCTTACCTGCCGGGAAGGCATTGTEST: gi|8859855|gb|AU097173.1|AU097173
genomic: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTA-CTGCCGGGAAGGCATTGTEST: gi|86865028|gb|CI344565.1|CI344565
genomic: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: TACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTEST: gi|8856768|gb|AU094086.1|AU094086
genomic: TACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTNTEST: gi|33686717|gb|CF314956.1|CF314956
genomic: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTATCTGCCGGGAAGGCATTGTEST: gi|88849220|gb|CI087742.1|CI087742
genomic: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: GACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTEST: gi|29668731|gb|CB665006.1|CB665006
genomic: GACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTEST: gi|88376281|gb|CI533183.1|CI533183
genomic: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: TGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTEST: gi|88255078|gb|CI353902.1|CI353902
genomic: TGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: GGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTTCCGGGAAGGCATTGTEST: gi|86543850|gb|CI184056.1|CI184056
genomic: GGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTEST: gi|33692106|gb|CF320345.1|CF320345
genomic: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTEST: gi|3761113|gb|C98361.1|C98361
genomic: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: TACTTTGGGTGCTGCTCTGGGTAAAGGAAGCCAGGCTGGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCCGGGAAGNCATTEST: gi|86890281|gb|CI321458.1|CI321458
genomic: TACTTT-GGTGCTGCTCTGGGTAAAGGAAGACAGGCT-GCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTG-CCGGGAAGGCATT
EST: AAATACTTT-GTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCC-GGAAGGCATT-TEST: gi|88960050|gb|CI381928.1|CI381928
genomic: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: TACAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTEST: gi|86529979|gb|CI170185.1|CI170185
genomic: TACAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: CAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTEST: gi|86545852|gb|CI186058.1|CI186058
genomic: CAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTEST: gi|87005762|gb|CI316181.1|CI316181
genomic: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: TACAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTEST: gi|88250600|gb|CI348830.1|CI348830
genomic: TACAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTEST: gi|86841231|gb|CI342961.1|CI342961
genomic: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: GTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTEST: gi|86870489|gb|CI320585.1|CI320585
genomic: GTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
EST: AAATACTTTGGTGCTGCTCTGGGTAAA-GAAGACAGGCTGCAAAAAC TGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttat ... tgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGT
ccatcttggtcatcagaatagttctgattccaacttttcaaatgctgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTGGAGGTTGCAAAGAT
ttctgat putative branch site (score: 3)
ctgtctttc putative PPT
ttttcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagctactgttgagcatccaacattagcttttgcttcgatttgcaccatcttggtcatcagaatagttctgattccaacttttcaaatgctgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTGGAGGTTGCAAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- gctactg
- - - - - - -gcatcca
- - - - - - - - - - - - - - - ttgcttc
- - - - - - - - - - - - - - - - - - - - ttgcacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgattc