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gtaagacccttaccttctggtaactgtaaggttaaaatgatctagtataagattaatggtttgccacactattggttgcaaaattgcagatattccgtgcagtgctaacagtgtttgccccctttcagATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCAAAGGAAAGTCTCTGGC
species | Oryza sativa |
transcript | LOC_Os01g57220.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTG ATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCEST: gi|87035348|gb|CI189970.1|CI189970
genomic: GACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTGgtaagaccct ... cccctttcagATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTC
EST: GAAGTTTGGATGGTTTTTCCTGTTTTACTTG ATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCEST: gi|86889655|gb|CI299853.1|CI299853
genomic: GAAGTTTGGATGGTTTTTCCTGTTTTACTTGgtaagaccct ... cccctttcagATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTC
EST: GACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTG ATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCEST: gi|3760903|gb|C98157.1|C98157
genomic: GACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTGgtaagaccct ... cccctttcagATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTC
EST: GACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTG ATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCEST: gi|33683758|gb|CF311997.1|CF311997
genomic: GACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTGgtaagaccct ... cccctttcagATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTC
EST: GACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTG ATCCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTT
genomic: GACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTGgtaagaccct ... cccctttcagAT-CCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTT
ggttgcaaaattgcagatattccgtgcagtgctaacagtgtttgccccctttcagATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCAAAGGAAAGTCTCTGGC
tgctaac putative branch site (score: 30)
tgtttgccccctttc putative PPT
aaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacccttaccttctggtaactgtaaggttaaaatgatctagtataagattaatggtttgccacactattggttgcaaaattgcagatattccgtgcagtgctaacagtgtttgccccctttcagATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCAAAGGAAAGTCTCTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA