Sequence
atgc intronic sequence ATGC exonic sequencegtaatgcccctcataactcgtcttcaggagccatttctttgcgtggcagccttgaacttaactcaaagcctgtcttggacagTCCACGGCTTCTTACAAAGCTGCGGCTCGGCTTGCAAGTGCTACTCCACCTCCAGCACATATCCTCAGTAGAGGCATTGGGTGGCAG
Basic information
species | Oryza sativa |
transcript | LOC_Os01g55500.4 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g55500.4 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G437859_T02 (Zea mays), 3'ss of exon 8
gtaatgcccctcataactcgtcttcaggagccatttctttgcgtggcagccttgaacttaactcaaag--cctgtcttggacagTCCACGGCTTCTTACAAAGCTGCGGCTCGGCTTGCAAGTGCTACTCCACCTCCAGCACATATCCTCAGTAGAGGCATTGGGTGGCAG
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gtgaggatcc--atattttgttttggaatcccattcgggagcgggaccaaactgaccttaacgcaatgtgcctctcttggacagTCCACAGCCTCCTACAAAGCCGCTGCTCGTCTTGCGAGTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58679659|gb|CK068346.1|CK068346EST: CGGTCAATCCTTTGGTATGGTATCTGCTGTGCTGGTATCGCTAGTAGAAG TCCACGGCTTCTTACAAAGCTGCGGCTCGGCTTGCAAGTGCTACTCCACC
genomic: CGGTCAATCCTTTGGTATGGTATCTGCTGTTCTGGTATCGCTAGTAG-AGgtaatgcccc ... tcttggacagTCCACGGCTTCTTACAAAGCTGCGGCTCGGCTTGCAAGTGCTACTCCACC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gagccatttctttgcgtggcagccttgaacttaactcaaagcctgtcttggacagTCCACGGCTTCTTACAAAGCTGCGGCTCGGCTTGCAAGTGCTACTCCACCTCCAGCACATATCCTCAGTAGAGGCATTGGGTGGCAG
acttaac putative branch site (score: 3)
cctgtctt putative PPT
atttcttt TA-rich tract