1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctatttagttttttttttcatatttagatgctatgatcaggaggttgtgtcattgttctgcaagtgtctttgctcataggtcatttgtgcatatctttagGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAG
species | Oryza sativa |
transcript | LOC_Os01g55170.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAG GACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGAEST: gi|109712028|gb|CI029198.1|CI029198
genomic: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAGgtttgattta ... atatctttagGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGA
EST: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAG GACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGAEST: gi|218505277|gb|FG951207.1|FG951207
genomic: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAGgtttgattta ... atatctttagGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGA
EST: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAG GACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGAEST: gi|33794161|gb|CF322971.1|CF322971
genomic: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAGgtttgattta ... atatctttagGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGA
EST: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAG GACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGAEST: gi|29673355|gb|CB669630.1|CB669630
genomic: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAGgtttgattta ... atatctttagGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGA
EST: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAG GACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGAEST: gi|86898803|gb|CI296092.1|CI296092
genomic: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAGgtttgattta ... atatctttagGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGA
EST: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAG GACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGAEST: gi|29682355|gb|CB678630.1|CB678630
genomic: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAGgtttgattta ... atatctttagGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGA
EST: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAG GACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGAEST: gi|29640595|gb|CB645604.1|CB645604
genomic: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAGgtttgattta ... atatctttagGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGA
EST: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAG GACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGAEST: gi|88661682|gb|CI458201.1|CI458201
genomic: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAGgtttgattta ... atatctttagGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGA
EST: CAATGAGAATGTGAACTCTAATATTTCCCATGAG GACATGCACCAACACCAAAAAGTAAATGGTAAAGGAGGACGAAAAGGTCGAEST: gi|38480080|gb|CF964169.1|CF964169
genomic: CAATGAGAATGTGAACTCTAATATTTCCCATGAGgtttgattta ... atatctttagGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGA
EST: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAG GACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGAEST: gi|7378454|gb|AU088725.1|AU088725
genomic: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAGgtttgattta ... atatctttagGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGA
EST: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAG GACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGAEST: gi|86897515|gb|CI294456.1|CI294456
genomic: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAGgtttgattta ... atatctttagGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGA
EST: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAG GACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGAEST: gi|86511851|gb|CI154484.1|CI154484
genomic: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAGgtttgattta ... atatctttagGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGA
EST: TTTCCCATGAG GACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGAEST: gi|58686024|gb|CK074711.1|CK074711
genomic: TTTCCCATGAGgtttgattta ... atatctttagGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGA
EST: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAG GACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGAEST: gi|58687646|gb|CK076333.1|CK076333
genomic: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAGgtttgattta ... atatctttagGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGA
EST: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAG GACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGA
genomic: TGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAGgtttgattta ... atatctttagGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGA
tgtgtcattgttctgcaagtgtctttgctcataggtcatttgtgcatatctttagGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAG
tatcttt CT-rich tract
atatcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatttagttttttttttcatatttagatgctatgatcaggaggttgtgtcattgttctgcaagtgtctttgctcataggtcatttgtgcatatctttagGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - tgctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgtgc