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gtatgataatacatatcttgaaaataggatactatcaaatctaattttcaagaaccattgattacttacgatatgcctgaacttatgtttagGTCGCTGATACTTCCCTGGAAGCACGATACATCACCCTTCATGTCTGCGACCTCGTTGCAGAGAGAGGTGCACGCTTAGCTGCTGCTGGTATATATGGCA
species | Oryza sativa |
transcript | LOC_Os01g53930.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCTCACATGATCTGAAACACCTGGGAGCTAAGCTGAAGGATATCCTGGGG GTCGCTGATACTTCCCTGGAAGCACGATACATCACCCTTCATGTCTGCGACEST: gi|58603916|gb|CK014444.1|CK014444
genomic: CCTCACATGATCTGAAACACCTGGGAGCTAAGCTGAAGGATATCCTGGGGgtatgataat ... ttatgtttagGTCGCTGATACTTCCCTGGAAGCACGATACATCACCCTTCATGTCTGCGAC
EST: CCTCACATGATCTGAAACACCTGGGAGCTAAGCTGAAGGATATCCTGGGG GTCGCTGATACTTCCCTGGAAGCACGATACATCACCCTTCATGTCTGCGACEST: gi|58655755|gb|CK044435.1|CK044435
genomic: CCTCACATGATCTGAAACACCTGGGAGCTAAGCTGAAGGATATCCTGGGGgtatgataat ... ttatgtttagGTCGCTGATACTTCCCTGGAAGCACGATACATCACCCTTCATGTCTGCGAC
EST: CCTCACATGATCTGAAACACCTGGGAGCTAAGCTGAAGGATATCCTGGGG GTCGCTGATACTTCCCTGGAAGCACGATACATCACCCTTCATGTCTGCGACEST: gi|218495539|gb|FG950460.1|FG950460
genomic: CCTCACATGATCTGAAACACCTGGGAGCTAAGCTGAAGGATATCCTGGGGgtatgataat ... ttatgtttagGTCGCTGATACTTCCCTGGAAGCACGATACATCACCCTTCATGTCTGCGAC
EST: CCTCACATGATCTGAAACACCTGGGAGCTAAGCTGAAGGATATCCTGGGG GTCGCTGATACTTCCCTGGAAGCACGATACATCACCCTTCATGTCTGCGAC
genomic: CCTCACATGATCTGAAACACCTGGGAGCTAAGCTGAAGGATATCCTGGGGgtatgataat ... ttatgtttagGTCGCTGATACTTCCCTGGAAGCACGATACATCACCCTTCATGTCTGCGAC
aatctaattttcaagaaccattgattacttacgatatgcctgaacttatgtttagGTCGCTGATACTTCCCTGGAAGCACGATACATCACCCTTCATGTCTGCGACCTCGTTGCAGAGAGAGGTGCACGCTTAGCTGCTGCTGGTATATATGGCA
tacttac putative branch site (score: 1)
aattttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgataatacatatcttgaaaataggatactatcaaatctaattttcaagaaccattgattacttacgatatgcctgaacttatgtttagGTCGCTGATACTTCCCTGGAAGCACGATACATCACCCTTCATGTCTGCGACCTCGTTGCAGAGAGAGGTGCACGCTTAGCTGCTGCTGGTATATATGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT