Sequence
atgc intronic sequence ATGC exonic sequence...tcttggaactatttgaattacctgccactaaatatgttttaccctttctttgatgccagaacaactgtgttttgaccagtgctgtttttgctctttgcagGATAAACCCTCACTATTTAAAAGTTTCTTCAAGTGGCTCAAACCTGGGGGTAAGGTCCTAATTAGTGATTACTGCAAGTGCCCTGGGAAACCTTCAGAAG
Basic information
| species | Oryza sativa |
| transcript | LOC_Os01g50030.1 |
| intron # | 8 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g50030.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G122296_T01 (Zea mays), 3'ss of exon 8
-----------------------------------------------------------------tcttggaactatttgaattacctgccactaaatatgtt----ttaccctttctttgatgccagaac---aactgtgt-tttgaccag--tgctgtttttgctctt-----tgcagGATAAACCCTCACTATTTAAAAGTTTCTTCAAGTGGCTCAAACCTGGGGGTAAGGTCCTAATTAGTGATTACTGCAAGTGCCCTGGGAAACCTTCAGAAG
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gtatgctttatacatataatgcatgtagtccttttcttccaagatgatagagctacatcttgatcatatagaatcatggaaactatcttcagttatagatgtacttattagaaacttgtttatgtcatacctttagttgactgtttaactaacatgccttttctggttttgactctgcagGATAAACCCTCCTTGTTTAAAAGTTTCTTCAAATGGCTGAAACCCGGGGGAAAGGTTCTAATCAGTGATTACTGCAAGAGTCCTGGAAAACCATCAGAAG
upper sequence: LOC_Os01g50030.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G060886_T01 (Zea mays), 3'ss of exon 8
---tcttggaactatttgaattacctgccactaaatatgttttaccctttctttgatgccagaacaactgtgttttgaccagtgctgtttttgctctt----tgcagGATAAACCCTCACTATTTAAAAGTTTCTTCAAGTGGCTCAAACCTGGGGGTAAGGTCCTAATTAGTGATTACTGCAAGTGCCCTGGGAAACCTTCAGAAG
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atttgtttttataatcacagt--cccaacattaaa--tgctgcgtgcttgttttgtt--cagagtaacattgtttaagctgaca-tgattttgcttttgttttgcagGACAAACCCTCTTTGTTCAAAAGTTTTTTCAAGTGGCTGAAGCCTGGGGGCAAGGTCCTTATCAGTGACTACTGCAGGAGTCCTGGGAAACCATCAGAGG
upper sequence: LOC_Os01g50030.1 (Oryza sativa), 3'ss of exon 8
lower sequence: Vv01s0011g05220.t01 (Vitis vinifera), 3'ss of exon 7
----tcttggaactatttgaattacctgccactaaatatgttttaccctttctttgatgccagaacaactgtgttttgaccagtgctgtttttgctctttgcagGATAAACCCTCACTATTTAAAAGTTTCTTCAAGTGGCTCAAACCTGGGGGTAAGGTCCTAATTAGTGATTACTGCAAGTGCCCTGGGAAACCTTCAGAAG
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gagtgctagtcacggtttcggcttgaagttgcaatgattgttctttcccttctctttttcttcatatcctgccacttgatagaaactgt----gaaactttcagGACAAACCTGCATTATTTAGATCTTTCTTCAAGTGGTTGAAGCCTGGAGGAAAAGTTCTAATTAGTGATTACTGCAAAAGATCAGGACCTCCATCACCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8335300|gb|BE040284.1|BE040284EST: ACAACACGTTTGACGTCATCTACAGTCGTGATACTATCCTTCACATACAA GATAAACCCTCACTATTTAAAAGTTTCTTCAAGTGGCTCAAACCTGGGGGT
genomic: ACAACACGTTTGACGTCATCTACAGTCGTGATACTATCCTTCACATACAAgtacgtttta ... ctctttgcagGATAAACCCTCACTATTTAAAAGTTTCTTCAAGTGGCTCAAACCTGGGGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctttgatgccagaacaactgtgttttgaccagtgctgtttttgctctttgcagGATAAACCCTCACTATTTAAAAGTTTCTTCAAGTGGCTCAAACCTGGGGGTAAGGTCCTAATTAGTGATTACTGCAAGTGCCCTGGGAAACCTTCAGAAG
ttttgac putative branch site (score: 3)
ctgtttttgctcttt putative PPT
tgttttt TA-rich tract
