1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gcgggtttccgatattaccacattatctgatttctttgtttctcttttacttaatatgacttgccttttttcatcttcagCTTGAGGTGGTTAATAAGAACCTTGAGGCATACTACGATGCATGGGACAGGTTCATTGGGTCATGGATGGTCATAAAAATAAAGGAACCTAGTTGCGTGT
species | Oryza sativa |
transcript | LOC_Os01g48990.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGGATTCAAACCTCTTCCAAATGAAGTTGTAAAAGCAGTGGACCCTCAG CTTGAGGTGGTTAATAAGAACCTTGAGGCATACTACGATGCATGGGACAGGEST: gi|29687191|gb|CB683466.1|CB683466
genomic: TTGGATTCAAACCTCTTCCAAATGAAGTTGTAAAAGCAGTGGACCCTCAGgcgggtttcc ... tcatcttcagCTTGAGGTGGTTAATAAGAACCTTGAGGCATACTACGATGCATGGGACAGG
EST: TTGGATTCAAACCTCTTCCAAATGAAGTTGTAAAAGCAGTGGACCCTCAG CTTGAGGTGGTTAATAAGAACCTTGAGGCATACTACGATGCATGGGACAGGEST: gi|89181456|gb|CI112962.1|CI112962
genomic: TTGGATTCAAACCTCTTCCAAATGAAGTTGTAAAAGCAGTGGACCCTCAGgcgggtttcc ... tcatcttcagCTTGAGGTGGTTAATAAGAACCTTGAGGCATACTACGATGCATGGGACAGG
EST: CAAATGAAGTTGTAAAAGCAGTGGACCCTCAG CTTGAGGTGGTTAATAAGAACCTTGAGGCATACTACGATGCATGGGACAGGEST: gi|88995282|gb|CI036857.1|CI036857
genomic: CAAATGAAGTTGTAAAAGCAGTGGACCCTCAGgcgggtttcc ... tcatcttcagCTTGAGGTGGTTAATAAGAACCTTGAGGCATACTACGATGCATGGGACAGG
EST: TGGACCCTCAG CTTGAGGTGGTTAATAAGAACCTTGAGGCATACTACGATGCATGGGACAGGEST: gi|29626889|gb|CB631900.1|CB631900
genomic: TGGACCCTCAGgcgggtttcc ... tcatcttcagCTTGAGGTGGTTAATAAGAACCTTGAGGCATACTACGATGCATGGGACAGG
EST: TTGGATTCAAACCTCTTCCAAATGAAGTCGTAAAAGCAGTGGACCCTCAG CTTGAGGTGGTTAATAAGAACCTTGAGGCATACTACGATGCATGGGACAGGEST: gi|86496003|gb|CI138636.1|CI138636
genomic: TTGGATTCAAACCTCTTCCAAATGAAGTTGTAAAAGCAGTGGACCCTCAGgcgggtttcc ... tcatcttcagCTTGAGGTGGTTAATAAGAACCTTGAGGCATACTACGATGCATGGGACAGG
EST: TTGGATTCAAACCTCTTCCAAATGAAGTTGTAAAAGCAGTGGACCCTCAG CTTGAGGTGGTTAATAAGAACCTTGAGGCATACTACGATGCATGGGACAGGEST: gi|88975066|gb|CI023317.1|CI023317
genomic: TTGGATTCAAACCTCTTCCAAATGAAGTTGTAAAAGCAGTGGACCCTCAGgcgggtttcc ... tcatcttcagCTTGAGGTGGTTAATAAGAACCTTGAGGCATACTACGATGCATGGGACAGG
EST: TTGGATTCAAACCTCTTCCAAATGAAGTTGTAAAAGCAGTGGACCCTCAG CTTGAGGTGGTTAATAAGAACCTTGAGGCATACTACGATGCATGGGACAGG
genomic: TTGGATTCAAACCTCTTCCAAATGAAGTTGTAAAAGCAGTGGACCCTCAGgcgggtttcc ... tcatcttcagCTTGAGGTGGTTAATAAGAACCTTGAGGCATACTACGATGCATGGGACAGG
tctgatttctttgtttctcttttacttaatatgacttgccttttttcatcttcagCTTGAGGTGGTTAATAAGAACCTTGAGGCATACTACGATGCATGGGACAGGTTCATTGGGTCATGGATGGTCATAAAAATAAAGGAACCTAGTTGCGTGT
acttaat putative branch site (score: 53)
cttgccttttttcatc putative PPT
tcttttacttaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgggtttccgatattaccacattatctgatttctttgtttctcttttacttaatatgacttgccttttttcatcttcagCTTGAGGTGGTTAATAAGAACCTTGAGGCATACTACGATGCATGGGACAGGTTCATTGGGTCATGGATGGTCATAAAAATAAAGGAACCTAGTTGCGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA