1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aagtatggtgcacttgtttctgtagcatatgcttgcaaatattctgttatgtattcaacttagagatacattgccaagcttatggcttgattcctggcagGTTTCCTTTGAAAGCTGTTAAGGTCATGCATACTGTTGCCCTGAGAACTGAAGCCACTATGTCTGGTGGGGAAACACCGGCTAACCTTGGTCAGGTGTTC
species | Oryza sativa |
transcript | LOC_Os01g47080.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGAGAAGGTTCTGATGGCATTATGCTTTCTGGGGAAACTGCACACGGAAA GTTTCCTTTGAAAGCTGTTAAGGTCATGCATACTEST: gi|2309639|gb|C25794.1|C25794
genomic: CGAGAAGGTTCTGATGGCATTATGCTTTCTGGGGAAACTGCACACGGAAAgtatgtgata ... ttcctggcagGTTTCCTTTGAAAGCTGTTAAGGTCATGCATACT
EST: CGAGAAGGTTCTGATGGCATTATGCTTTCTGGGGGAACTGNACACGGAA- GTTTCCTTTGNAAGCTGTTEST: gi|58683676|gb|CK072363.1|CK072363
genomic: CGAGAAGGTTCTGATGGCATTATGCTTTCTGGGGAAACTGCACACGGAAAgtatgtgata ... ttcctggcagGTTTCCTTTGAAAGCTGTT
EST: CGAGAAGGTTCTGATGGCATTATGCTTTCTGGGGAAACTGCACACGGAAA GTTTCCTTTGAAAGCTGTTAAGGTCATGCATACTGTTGCCCTGAGAACTGAEST: gi|58668249|gb|CK056935.1|CK056935
genomic: CGAGAAGGTTCTGATGGCATTATGCTTTCTGGGGAAACTGCACACGGAAAgtatgtgata ... ttcctggcagGTTTCCTTTGAAAGCTGTTAAGGTCATGCATACTGTTGCCCTGAGAACTGA
EST: CGAGAAGGTTCTGATGGCATTATGCTTTCTGGGGAAACTGCACACGGAAA GTTTCCTTTGAAAGCTGTTAAGGTCATGCATACTGTTGCCCTGA
genomic: CGAGAAGGTTCTGATGGCATTATGCTTTCTGGGGAAACTGCACACGGAAAgtatgtgata ... ttcctggcagGTTTCCTTTGAAAGCTGTTAAGGTCATGCATACTGTTGCCCTGA
gttatgtattcaacttagagatacattgccaagcttatggcttgattcctggcagGTTTCCTTTGAAAGCTGTTAAGGTCATGCATACTGTTGCCCTGAGAACTGAAGCCACTATGTCTGGTGGGGAAACACCGGCTAACCTTGGTCAGGTGTTC
gcttgat putative branch site (score: 34)
ttcct CT-rich tract
tattcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtatggtgcacttgtttctgtagcatatgcttgcaaatattctgttatgtattcaacttagagatacattgccaagcttatggcttgattcctggcagGTTTCCTTTGAAAGCTGTTAAGGTCATGCATACTGTTGCCCTGAGAACTGAAGCCACTATGTCTGGTGGGGAAACACCGGCTAACCTTGGTCAGGTGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - -tggtgca
- - - - - - - - - -ctgtagc
- - - - - - - - - - - - - - -tgcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggcttg