1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ctttctaatttggaaagttgtttcaagagttcattttacacctattttattaggatagcttttcagatattctatttttcacatgacattgtatcttcagGCAGACCAAGAATTCGATCTTCCAGTGAAAGCAAAGACTGACATATGTACTATAATGTATACCAGTGGAACTACTGGTGACCCCAAAGGTGTACTGATCT
species | Oryza sativa |
transcript | LOC_Os01g46750.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AATATGGGCTGGAGATCTATTCATGGGATGAATTTCTTTCTTTG GCAGACCAAGAATTCGATCTTCCAGTGAAAGCAAAGACTGACATATGTACTEST: gi|58691021|gb|CK079708.1|CK079708
genomic: AATATGGGCTGGAGATCTATTCATGGGATGAATTTCTTTCTTTGgtaagacatg ... gtatcttcagGCAGACCAAGAATTCGATCTTCCAGTGAAAGCAAAGACTGACATATGTACT
EST: CCTCCAAATATGGGCTGGAGATCTATTCATGGGATGAATTTCTTTCTTTG GCAGCCCAAGAATTCEST: gi|58655155|gb|CK043835.1|CK043835
genomic: CCTCCAAATATGGGCTGGAGATCTATTCATGGGATGAATTTCTTTCTTTGgtaagacatg ... gtatcttcagGCAGACCAAGAATTC
EST: CCTCCAAATATGGGCTGGAGATCTATTCATGGGATGAATTTCTTTCTTTG GCAGACCAAGAATTCGATCTTCCAGTGAAAGCAAAGACTGACATATGTACTEST: gi|29618098|gb|CB623110.1|CB623110
genomic: CCTCCAAATATGGGCTGGAGATCTATTCATGGGATGAATTTCTTTCTTTGgtaagacatg ... gtatcttcagGCAGACCAAGAATTCGATCTTCCAGTGAAAGCAAAGACTGACATATGTACT
EST: CCTCCAAATATGGGCTGGAGATCTATTCATGGGATGAATTTCTTTCTTTG GCAGACCAAGAATTCGATCTTCCAGTGAAAGCAAAGACTGACATATGTACTEST: gi|88349500|gb|CI653779.1|CI653779
genomic: CCTCCAAATATGGGCTGGAGATCTATTCATGGGATGAATTTCTTTCTTTGgtaagacatg ... gtatcttcagGCAGACCAAGAATTCGATCTTCCAGTGAAAGCAAAGACTGACATATGTACT
EST: CCTCCAAATATGGGCTGGAGATCTATTCATGGGATGAATTTCTTTCTTTG GCAGACCAAGAATTCGATCTTCCAGTGAAAGCAAAGACTGACATATGTACT
genomic: CCTCCAAATATGGGCTGGAGATCTATTCATGGGATGAATTTCTTTCTTTGgtaagacatg ... gtatcttcagGCAGACCAAGAATTCGATCTTCCAGTGAAAGCAAAGACTGACATATGTACT
tttattaggatagcttttcagatattctatttttcacatgacattgtatcttcagGCAGACCAAGAATTCGATCTTCCAGTGAAAGCAAAGACTGACATATGTACTATAATGTATACCAGTGGAACTACTGGTGACCCCAAAGGTGTACTGATCT
tatcttc CT-rich tract
agatattctattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttctaatttggaaagttgtttcaagagttcattttacacctattttattaggatagcttttcagatattctatttttcacatgacattgtatcttcagGCAGACCAAGAATTCGATCTTCCAGTGAAAGCAAAGACTGACATATGTACTATAATGTATACCAGTGGAACTACTGGTGACCCCAAAGGTGTACTGATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA