1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...atccgtttgtattattgcatttatcccatgatgtaattctggcgttcatttcttgtatatttgattctacttatgtcatttgtaaaacctttttttgcagAATTTCTTGCCATTGTGGTCCATGCAAGGGACAAAAATTTTTGTTCAATGAATGGGAACGGCATGCTGGCTGCAGAAGTAAAAACTGGAAGTCAAGTATT
species | Oryza sativa |
transcript | LOC_Os01g46700.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCAGTTATCTGTTTNGGCATGGAAGGAACTTACCTACGAGATCTTGAACT AATTTCTTGCCATTGTGGTCCATGCAAGGGACAAAAATTTTTGTTCAATGAEST: gi|88332864|gb|CI639712.1|CI639712
genomic: GCAGTTATCTGTTTTGGCATGGAAGGAACTTACCTACGAGATCTTGAACTgtaagcacca ... ttttttgcagAATTTCTTGCCATTGTGGTCCATGCAAGGGACAAAAATTTTTGTTCAATGA
EST: GCAGTTATCTGTTTTGGCATGGAAGGAACTTACCTACGAGATCTTGAACT AATTTCTTGCCATTGTGGTCCATGCAAGGGACAAAAATTTTTGTTCAATGAEST: gi|29631114|gb|CB636123.1|CB636123
genomic: GCAGTTATCTGTTTTGGCATGGAAGGAACTTACCTACGAGATCTTGAACTgtaagcacca ... ttttttgcagAATTTCTTGCCATTGTGGTCCATGCAAGGGACAAAAATTTTTGTTCAATGA
EST: GCAGTTATCTGTTTTGGCATGGAAGGAACTTACCTACGAGATCTTGAACT AATTTCTTGCCATTGTGGTCCATGCAAGGGACAAAAATTTTTGTTCAATGAEST: gi|58696065|gb|CK084752.1|CK084752
genomic: GCAGTTATCTGTTTTGGCATGGAAGGAACTTACCTACGAGATCTTGAACTgtaagcacca ... ttttttgcagAATTTCTTGCCATTGTGGTCCATGCAAGGGACAAAAATTTTTGTTCAATGA
EST: GCAGTTATCTGTTTTGGCATGGAAGGAACTTACCTACGAGATCTTGAACT AATTTCTTGCCATTGTGGTCCATGCAAGGGACAAAAATTTTTGTTCAATGAEST: gi|88345953|gb|CI632426.1|CI632426
genomic: GCAGTTATCTGTTTTGGCATGGAAGGAACTTACCTACGAGATCTTGAACTgtaagcacca ... ttttttgcagAATTTCTTGCCATTGTGGTCCATGCAAGGGACAAAAATTTTTGTTCAATGA
EST: GCAGTTATCTGTTTTGGCATGGAAGGAACTTACCTACGAGATCTTGAACT AATTTCTTGCCATTGTGGTCCATGCAAGGGACAAAAATTTTTGTTCAATGA
genomic: GCAGTTATCTGTTTTGGCATGGAAGGAACTTACCTACGAGATCTTGAACTgtaagcacca ... ttttttgcagAATTTCTTGCCATTGTGGTCCATGCAAGGGACAAAAATTTTTGTTCAATGA
tcatttcttgtatatttgattctacttatgtcatttgtaaaacctttttttgcagAATTTCTTGCCATTGTGGTCCATGCAAGGGACAAAAATTTTTGTTCAATGAATGGGAACGGCATGCTGGCTGCAGAAGTAAAAACTGGAAGTCAAGTATT
atttgat putative branch site (score: 26)
cctttttttgc putative PPT
ttgtatatttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atccgtttgtattattgcatttatcccatgatgtaattctggcgttcatttcttgtatatttgattctacttatgtcatttgtaaaacctttttttgcagAATTTCTTGCCATTGTGGTCCATGCAAGGGACAAAAATTTTTGTTCAATGAATGGGAACGGCATGCTGGCTGCAGAAGTAAAAACTGGAAGTCAAGTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - ttgcatt
- - - - - - - - - - - - - catgatg
- - - - - - - - - - - - - - - - - - ttctggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatttg