1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aagccatcgaagaacttttattttctcttctacctggttgatcactttgttcttgtgtttaagttagattgaatcatgaatcatttgctacgttttgcagGTCTACTATTGTTCACTCAACTCCAATTCCTGCCAAGGAACAGCCCCGCATTGGCCCATCAAGGGATAAACCATCTGATGAACCCTATAGCAATCCCCGG
species | Oryza sativa |
transcript | LOC_Os01g43910.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGAAATGGCCCGGTAATTCCAATGGATAGAAAGCACACTTCTCTTCCCAG GTCTACTATTGTTCACTCAACTCCAATTCCTGCCAAGGNAACAGCCCCGCAEST: gi|44679557|gb|CR292991.1|CR292991
genomic: GGAAATGGCCCGGTAATTCCAATGGATAGAAAGCACACTTCTCTTCCCAGgtattgtttt ... cgttttgcagGTCTACTATTGTTCACTCAACTCCAATTCCTGCCAAGG-AACAGCCCCGCA
EST: GGAAATGGCCCGGTAATTCCAATGGATAGAAAGCACACTTCTCTTCCCAG GTCTACTATTGTTCACTCAACTCCAATTCCTGCCAAGGAACAGCCCCGCATEST: gi|58658976|gb|CK047656.1|CK047656
genomic: GGAAATGGCCCGGTAATTCCAATGGATAGAAAGCACACTTCTCTTCCCAGgtattgtttt ... cgttttgcagGTCTACTATTGTTCACTCAACTCCAATTCCTGCCAAGGAACAGCCCCGCAT
EST: GGAAATGGCCCGGTAATTCCAATGGATAGAAAGCACACTTCTCTTCCCAG GTCTACTATTGTTCACTCAACTCCAATTCCT
genomic: GGAAATGGCCCGGTAATTCCAATGGATAGAAAGCACACTTCTCTTCCCAGgtattgtttt ... cgttttgcagGTCTACTATTGTTCACTCAACTCCAATTCCT
tttgttcttgtgtttaagttagattgaatcatgaatcatttgctacgttttgcagGTCTACTATTGTTCACTCAACTCCAATTCCTGCCAAGGAACAGCCCCGCATTGGCCCATCAAGGGATAAACCATCTGATGAACCCTATAGCAATCCCCGG
tttaagtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagccatcgaagaacttttattttctcttctacctggttgatcactttgttcttgtgtttaagttagattgaatcatgaatcatttgctacgttttgcagGTCTACTATTGTTCACTCAACTCCAATTCCTGCCAAGGAACAGCCCCGCATTGGCCCATCAAGGGATAAACCATCTGATGAACCCTATAGCAATCCCCGG
- - - - - - - - - - - - - - - tacctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catttgc