Sequence
atgc intronic sequence ATGC exonic sequencegtaagtttttttgatagtattttaactgttcatcattcactaaggatgaagtacattcaactctgggtgtctttgttcctgagtaaaaacttaaatgtagGTCTTGGTGAAAGATCTTTTGAGGAAATATCCTCAATGGAGCCATGATTGTATAGCAGTTGTTGGAAACATCAGTAGCAAAAATATTCAGGAGCCAAAAG
Basic information
species | Oryza sativa |
transcript | LOC_Os01g43630.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g43630.1 (Oryza sativa), 3'ss of exon 8
lower sequence: AC198725.4_FGT007 (Zea mays), 3'ss of exon 8
gtaagtttttttgatagtattttaactgttcatcattcactaaggatgaagtacattcaactctgggtgtctttgttcctgagtaaaaacttaaatgtagGTCTTGGTGAAAGATCTTTTGAGGAAATATCCTCAATGGAGCCATGATTGTATAGCAGTTGTTGGAAACATCAGTAGCAAAAATATTCAGGAGCCAAAAG
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gtaagtgtttgtaatgctagtt--actgacctttactcatga--------------tctattctaacag-----gattctgattta-----cacatgcagGTCTTGGTAAAAGATCTTCTCAGAAAATATCCTCAATGGAGCCATGATTGTATAGCTGTTGTTGGAAATATCAGCAGCAAAAACATCCAGGAGCCCAAAG
upper sequence: LOC_Os01g43630.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G029077_T01 (Zea mays), 3'ss of exon 6
gtaagtttttttgatagtattt-----taactgttcatcattca--cta--aggatgaag---tacattcaactctgggtgtctttgttcctgagtaaaaacttaaatgtagGTCTTGGTGAAAGATCTTTTGAGGAAATATCCTCAATGGAGCCATGATTGTATAGCAGTTGTTGGAAACATCAGTAGCAAAAATATTCAGGAGCCAAAAG
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gtaagtgtttgtaatgctagttactgatctttactcatgatctagtctagcaggattacgatttacattccact-tgtatcttgatgttttggatttaaaaataaaacgcagGTCTTGGTGAAAGATCTTCTCAGAAAATATCCTCAATGGAGTCATGATTGTATAGCAGTTGTGGGAAATATCAGCAGCAAAAACATTCAGGAGCCAAAAG
upper sequence: LOC_Os01g43630.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GLYMA04G08480.1 (Glycine max), 3'ss of exon 6
------------------------------------------------gtaagtttttttgatagtattttaactgttcatcattcactaaggatgaagtac----attcaactctg----ggtgtctt----tgttcctgagt--aaaaacttaaatgt--agGTCTTGGTGAAAGATCTTTTGAGGAAATATCCTCAATGGAGCCATGATTGTATAGCAGTTGTTGGAAACATCAGTAGCAAAAATATTCAGGAGCCAAAAG
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gtaaacatgacaagtgcctgctagctaccctgaaatttgtgcttaagagtagtattgctttgttttatattatatgca-aacatgtgttgaaagtaaggcattttgatttgacttagctatggtatggtagactaatgcgaagtttgaaagttcatttgttcagGTGCTTGTGAAAGATCTGCTAAGAAAATATCCACAATGGAGTCAGGATTGTATTGCTGTTGTTGGAAATATCAGTAGTAAAAATGTCCAAGAACCCAAGG
upper sequence: LOC_Os01g43630.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GLYMA06G08590.1 (Glycine max), 3'ss of exon 6
------------------------------------------------gtaagtttttttgatagtattttaactgttcatcattcactaaggatgaagtac----attcaactctg----ggtgtctt----tgttcctgagt--aaaaacttaaatgt--agGTCTTGGTGAAAGATCTTTTGAGGAAATATCCTCAATGGAGCCATGATTGTATAGCAGTTGTTGGAAACATCAGTAGCAAAAATATTCAGGAGCCAAAAG
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gtaaacatgacaagtgcctgctagctaccctgaaatttgtgcttaagagtagtattgctttgttttatattatatgca-aacatgtgttgaaagtaaggcattttgatttgacttagatatggtatggtagactaatgcgaagtttgaaagttcatttgttcagGTGCTTGTGAAAGATCTGCTAAGAAAATATCCACAATGGAGTCAGGATTGTATTGCTGTTGTTGGAAATATCAGTAGTAAAAATGTCCAAGAACCCAAGG
upper sequence: LOC_Os01g43630.1 (Oryza sativa), 3'ss of exon 8
lower sequence: Vv04s0008g03880.t01 (Vitis vinifera), 3'ss of exon 6
------------------------------------------------------------gtaagtttttttgatagtattttaactgttcat-cattcactaaggatgaa-gtac-attcaactctgggtgtctttgttcctg--agtaaaaa---cttaaatgtagGTCTTGGTGAAAGATCTTTTGAGGAAATATCCTCAATGGAGCCATGATTGTATAGCAGTTGTTGGAAACATCAGTAGCAAAAATATTCAGGAGCCAAAAG
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gtgaatttttacagctgtgcctagatgcttggatttttattgtgattgaatttgaacattgaaccaaactccaaaaaaatttatgctcttcatgcatagaagtaacatgagcatatgatttaactgttattaatcagattgatacaagtctggagttctctcatgtagGTGCTTGTAAAAGATCTGCTAAGGAAATATCCACAATGGAGTCATGATTGCATTGCAGTTGTTGGGAATATCAGCAGCAAAAATGTTCAGGAGCCCAAGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|66915427|gb|CX102275.1|CX102275EST: TTCTGCAATTCCTTGAAATGGACAAGGAATATGTGACGGCTGAAACTCTT GTCTTGGTGAAAGATCTTTTGAGGAAATATCCTCAATGGAGCCATGATTGT
genomic: TTCTGCAATTCCTTGAAATGGACAAGGAATATGTGACGGCTGAAACTCTTgtaagttttt ... ttaaatgtagGTCTTGGTGAAAGATCTTTTGAGGAAATATCCTCAATGGAGCCATGATTGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgaagtacattcaactctgggtgtctttgttcctgagtaaaaacttaaatgtagGTCTTGGTGAAAGATCTTTTGAGGAAATATCCTCAATGGAGCCATGATTGTATAGCAGTTGTTGGAAACATCAGTAGCAAAAATATTCAGGAGCCAAAAG
taaaaacttaaatgta TA-rich tract