1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcaaaacatagtgagagttcgaatggatactattatacttccattagttttctttatggccttctctaattctgtctcgttgctctgttgatttgcacagGACCAACACTGTTACTCCCGTGTTCTTGAGTTGATCGTAAACGTTTGGGCATTCCACAGTTCAAGGAGGATGGTTTATGTAGACCCCGAGACTGGTGCGA
species | Oryza sativa |
transcript | LOC_Os01g43380.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGTACGACAAACATCATGAAACAGGGCATTGCATATTGAGTCTTCACAGG GACCAACACTGTTACTCCCGTGTTCTTGAGTTAATCGTAAACGTTTGGGCAEST: gi|112786732|gb|EE591332.1|EE591332
genomic: TGTACGACAAACATCATGAAACAGGGCATTGCATATTGAGTCTTCACAGGgtgcgtccat ... atttgcacagGACCAACACTGTTACTCCCGTGTTCTTGAGTTGATCGTAAACGTTTGGGCA
EST: TGTACGACAAACATCATGAAACAGGGCATTGCATATTGAGTCTTCACAGG GACCAACACTGTTACTCCCGTGTTCTTGAGTTGATCGTAAACGTTTGGGCAEST: gi|218478411|gb|FG955761.1|FG955761
genomic: TGTACGACAAACATCATGAAACAGGGCATTGCATATTGAGTCTTCACAGGgtgcgtccat ... atttgcacagGACCAACACTGTTACTCCCGTGTTCTTGAGTTGATCGTAAACGTTTGGGCA
EST: CGACAAACATCATGAAACAGGGCATTGCATATTGAGTCTTCACAGG GACCAACACTGTTACTCCCGTGTTCTTGAGTTAATCGTAAACGTTTGGGCAEST: gi|25801436|gb|CA757397.1|CA757397
genomic: CGACAAACATCATGAAACAGGGCATTGCATATTGAGTCTTCACAGGgtgcgtccat ... atttgcacagGACCAACACTGTTACTCCCGTGTTCTTGAGTTGATCGTAAACGTTTGGGCA
EST: TGTACGACAAACATCATGAAACAGGGCATTGCATATTGAGTCTTCACAGG GACCAACACTGTTACTCCCGTGTTCTTGAGTTAATCGTAAACGTTTGGGCA
genomic: TGTACGACAAACATCATGAAACAGGGCATTGCATATTGAGTCTTCACAGGgtgcgtccat ... atttgcacagGACCAACACTGTTACTCCCGTGTTCTTGAGTTGATCGTAAACGTTTGGGCA
agttttctttatggccttctctaattctgtctcgttgctctgttgatttgcacagGACCAACACTGTTACTCCCGTGTTCTTGAGTTGATCGTAAACGTTTGGGCATTCCACAGTTCAAGGAGGATGGTTTATGTAGACCCCGAGACTGGTGCGA
tctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaaaacatagtgagagttcgaatggatactattatacttccattagttttctttatggccttctctaattctgtctcgttgctctgttgatttgcacagGACCAACACTGTTACTCCCGTGTTCTTGAGTTGATCGTAAACGTTTGGGCATTCCACAGTTCAAGGAGGATGGTTTATGTAGACCCCGAGACTGGTGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- -aaacatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctctg