Sequence
atgc intronic sequence ATGC exonic sequence...tagcactacattgcatgatgacatgataattaaaatattttctctcttattcttagtttttcccattccctaacatcataacgtgtgtcctgtttggcagGTTAGGAGATTTTTTCACTCCCACTTCAAGGTTGATAGAGACCTTCAATCGTCAGTTGTTGTTTATTCACAGAAGAGTGTATTGTGATCACTGTGGCAGA
Basic information
species | Oryza sativa |
transcript | LOC_Os01g39810.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g39810.4 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G164175_T01 (Zea mays), 3'ss of exon 9
-tagcactacattgcatgatgacatgataattaaaatattttctctcttattcttagtttttcccattccctaacatcataacgtgtgtcctgtttggcagGTTAGGAGATTTTTTCACTCCCACTTCAAGGTTGATAGAGACCTTCAATCGTCAGTTGTTGTTTATTCACAGAAGAGTGTATTGTGATC-ACTGTGGCAGA
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catgcttgattcagagggagcacacgacaataatgataggatttgttgt-ttcataacagtagtagttaaactcattaataacaattgttatggttggcagATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCGGCTGTTGTGGTTTATTCACGGAGGAATGTGCTCTGATTTAGTACTGATG-
upper sequence: LOC_Os01g39810.4 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G000937_T02 (Zea mays), 3'ss of exon 10
ta-gcactacattgcatgatgacatgataattaaaatat--tttctctcttattcttagtttttcccattccctaacatcataacgtgtgtcctgtttggcagGTTAGGAGATTTTTTCACTCCCACTTCAAGGTTGATAGAGACCTTCAATCGTCAGTTGTTGTTTATTCACAGAAGAGTGTATTGTGATC-ACTGTGGCAGA
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tatgtatgattcagagggagtacatgtcaataatgataggatttattgtttcataacagtaaaactcaaactcattggtaataat---tgttatggttggcagATGAGGAGGTTTTTCCACTCACATTTCAAGATTGACAGAGACCTTCAGTCGGCTGTTGTGGTTTATTCATGGAGGGATGTGCTATGATTTAGTACTGATG-
upper sequence: LOC_Os01g39810.4 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G103473_T01 (Zea mays), 3'ss of exon 3
tagcactacattgcatgatg-acatgataattaaaatat--tttctctcttattcttagtttttcccattccctaacatcataacgtgtgtcctgtttggcagGTTAGGAGATTTTTTCACTCCCACTTCAAGGTTGATAGAGACCTTCAATCGTCAGTTGTTGTTTATTCACAGAAGAGTGTATTGTGATC-ACTGTGGCAGA
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tatgtttgattcagagggagtacatgtcaataatgataggatttattgtttcataacagtaatactcaaactcattggtaataat---tgttatggttggcagATGAGGAGATTTTTCCACTCACATTTCAAGGTTGATAGAGACCTTCAGTCGGCTGTTGTGGTTTATTCACGGAGGGATGTGCTATGATTTAGTACTGATG-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86427881|gb|CI072978.1|CI072978EST: AATCTGAAGAAAGGCATGTCAAGTTGCTTCTGCGCAATTCATTTCAAGAG GTTAGGAGATTTTTTCACTCCCACTTCAAGGTTGATAGAGACCTTCAATCG
genomic: AATCTGAAGAAAGGCATGTCAAGTTGCTTCTGCGCAATTCATTTCAAGAGgtaaaacact ... tgtttggcagGTTAGGAGATTTTTTCACTCCCACTTCAAGGTTGATAGAGACCTTCAATCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttattcttagtttttcccattccctaacatcataacgtgtgtcctgtttggcagGTTAGGAGATTTTTTCACTCCCACTTCAAGGTTGATAGAGACCTTCAATCGTCAGTTGTTGTTTATTCACAGAAGAGTGTATTGTGATCACTGTGGCAGA
tcataac putative branch site (score: 2)
tcctgttt putative PPT
ttagttttt TA-rich tract