1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttaactaatttactgtatactattatggaatggaaggagtattaactaagagctattactccgggagataattaactaatttacggtatgatcttttcagCGTCGTCCTGTCAAGCCGGGATTCTCCTTGCCTGTAGTACAGAATGATAGACCTACGTATCCTGGACACGTTCTCTTCGTCCCACATGTGGTAGAAGAAG
species | Oryza sativa |
transcript | LOC_Os01g38359.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCATAGATGGCCCGAATGAAGCCAAGACGACAGCCAGAGCTCTTCCCAAG CGTCGTCCTGTCAAGCCGGGATTCTCCTTGCCTGTAGTACAGAATGATAGAEST: gi|8859058|gb|AU096376.1|AU096376
genomic: TCATAGATGGCCCGAATGAAGCCAAGACGACAGCCAGAGCTCTTCCCAAGgtaattcaat ... atcttttcagCGTCGTCCTGTCAAGCCGGGATTCTCCTTGCCTGTAGTACAGAATGATAGA
EST: TCATAGATGGCCCGAATGAAGCCAAGACGACAGCCAGAGCTCTTCCCAAG CGTCGTCCTGTCAAGCCGGGATTCTCCTTGCCTGTAGTACAGAATGATAGA
genomic: TCATAGATGGCCCGAATGAAGCCAAGACGACAGCCAGAGCTCTTCCCAAGgtaattcaat ... atcttttcagCGTCGTCCTGTCAAGCCGGGATTCTCCTTGCCTGTAGTACAGAATGATAGA
ctaagagctattactccgggagataattaactaatttacggtatgatcttttcagCGTCGTCCTGTCAAGCCGGGATTCTCCTTGCCTGTAGTACAGAATGATAGACCTACGTATCCTGGACACGTTCTCTTCGTCCCACATGTGGTAGAAGAAG
aactaat putative branch site (score: 2)
tcttttc putative PPT
agataattaactaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaactaatttactgtatactattatggaatggaaggagtattaactaagagctattactccgggagataattaactaatttacggtatgatcttttcagCGTCGTCCTGTCAAGCCGGGATTCTCCTTGCCTGTAGTACAGAATGATAGACCTACGTATCCTGGACACGTTCTCTTCGTCCCACATGTGGTAGAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG