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gtatcttttcacttggatgctggtagatcaaattatcttaaaagtcatctgttattgccactgatttgatgttcaaattgcagAATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACTGCCACTGAGAGGACCCTTTGCTGTATTTTGGAGAACTTCCAGAAGGAGA
species | Oryza sativa |
transcript | LOC_Os01g37837.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGCCAGAAAAAG AATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACTEST: gi|24468659|gb|CA305608.1|CA305608
genomic: TGGCCAGAAAAAGgtatcttttc ... caaattgcagAATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACT
EST: GCACAGATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAG AATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACTEST: gi|15851150|gb|BI799426.1|BI799426
genomic: GCACAGATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAGgtatcttttc ... caaattgcagAATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACT
EST: GGTATAGTTTATGCCCAGAAAAAG AATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACTEST: gi|89180489|gb|CI044768.1|CI044768
genomic: GGTATAGGTTATGGCCAGAAAAAGgtatcttttc ... caaattgcagAATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACT
EST: GCCAGAAAAAG AATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACTEST: gi|88847058|gb|CI001330.1|CI001330
genomic: GCCAGAAAAAGgtatcttttc ... caaattgcagAATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACT
EST: ACAGATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAG AATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACTEST: gi|18386014|gb|BM419213.1|BM419213
genomic: ACAGATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAGgtatcttttc ... caaattgcagAATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACT
EST: GCACAGATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAG AATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACTEST: gi|29633862|gb|CB638871.1|CB638871
genomic: GCACAGATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAGgtatcttttc ... caaattgcagAATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACT
EST: TTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAG AATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACTEST: gi|88850119|gb|CI091414.1|CI091414
genomic: TTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAGgtatcttttc ... caaattgcagAATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACT
EST: GCCAGAAAAAG AATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACTEST: gi|89173694|gb|CI041587.1|CI041587
genomic: GCCAGAAAAAGgtatcttttc ... caaattgcagAATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACT
EST: GCACAGATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAG AATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACTEST: gi|58604093|gb|CK014621.1|CK014621
genomic: GCACAGATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAGgtatcttttc ... caaattgcagAATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACT
EST: GCACAGATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAG AATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACTEST: gi|86415314|gb|CI069717.1|CI069717
genomic: GCACAGATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAGgtatcttttc ... caaattgcagAATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACT
EST: GCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAG AATGATGAGCAATCCAAGCCATTCGTTCATATGTTGAACTCAACATTGACTEST: gi|27577321|gb|CB000016.1|CB000016
genomic: GCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAGgtatcttttc ... caaattgcagAATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACT
EST: GCACAGATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAG AATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACTEST: gi|88903213|gb|CI088751.1|CI088751
genomic: GCACAGATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAGgtatcttttc ... caaattgcagAATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACT
EST: GCACAGATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAG AATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACTEST: gi|88480715|gb|CI417986.1|CI417986
genomic: GCACAGATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAGgtatcttttc ... caaattgcagAATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACT
EST: GTTATGGCCAGAAAAAG AATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACTEST: gi|163925426|gb|EG713339.1|EG713339
genomic: GTTATGGCCAGAAAAAGgtatcttttc ... caaattgcagAATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACT
EST: GCACAGATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAG AATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACT
genomic: GCACAGATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAGgtatcttttc ... caaattgcagAATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACT
caaattatcttaaaagtcatctgttattgccactgatttgatgttcaaattgcagAATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACTGCCACTGAGAGGACCCTTTGCTGTATTTTGGAGAACTTCCAGAAGGAGA
tatcttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcttttcacttggatgctggtagatcaaattatcttaaaagtcatctgttattgccactgatttgatgttcaaattgcagAATGATGAGCAATCCAAGCAATTCGTTCATATGTTGAACTCAACATTGACTGCCACTGAGAGGACCCTTTGCTGTATTTTGGAGAACTTCCAGAAGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA