Sequence
atgc intronic sequence ATGC exonic sequence...ataaactttacatttgatttactacttttttcttctacattcttctgttgttgatttgtcatttcacttatgtcaatttttcttttcaactattgcccagGCGTACTATTAAATCATTCATCCAAGGATTTCTGCCAGGAATTGCTCTGAAGATTTTCCTTATATTGCTCCCTAGCATATTAATGTTTATGTCTAAAGTT
Basic information
species | Oryza sativa |
transcript | LOC_Os01g35050.4 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g35050.3 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G064189_T01 (Zea mays), 3'ss of exon 1
ataaactttacatttgatttactacttttt--tcttctacattcttc-tgttgttgatttgtcatttcacttatgtcaatttttcttttcaactattgcccagGCGTACTATTAAATCATTCATCCAAGGATTTCTGCCAGGAATTGCTCTGAAGATTTTCCTTATATTGCTCCCTAGCATATTAATGTTTATGTCTAAAGTT
|| | | ||| || || | |||||| ||| || | | | |||| | || | | | | ||| | |||| | ||||| | || ||||| |||||||||||||||||||||||| || || || ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
ccaagccccaaattggaattttttctttttactctgttataatgggcatgtttcttatctctgaaaccttttagttgaattgtatttttc---ttttcttcagGCATACTATTAAATCATTCATCCAAGGTTTCCTTCCGGGAATTGCTCTGAAGATCTTCCTTATATTGCTCCCAAGCATATTAATGTTTATGTCTAAGGTT
upper sequence: LOC_Os01g35050.3 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G021194_T01 (Zea mays), 3'ss of exon 8
-ataaactttacatttgatttactacttttt--tcttctacattcttc-tgttgttgatttgtcatttcacttatgtcaatttttcttttcaactattgcccagGCGTACTATTAAATCATTCATCCAAGGATTTCTGCCAGGAATTGCTCTGAAGATTTTCCTTATATTGCTCCCTAGCATATTAATGTTTATGTCTAAAGTT
|| | | | ||| || || | |||||| ||| || | | | |||| | || | | | | ||| | || | || ||| || || ||||| |||||||||||||||||||||||| || || || ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
accaagcctcaaattggaattgtttctttttactctgttataatgggcatgtttcttatctctgaaaccttttagttgaactgtttttt----cttttcttcagGCATACTATTAAATCATTCATCCAAGGTTTCCTTCCGGGAATTGCTCTGAAGATCTTCCTTATATTGCTCCCAAGCATATTAATGTTTATGTCTAAGGTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|66923753|gb|CX110601.1|CX110601EST: ATTGAAGGGATTGAGAAGGCAGCTCCATTTCTGAAGCCTTTGATTGAAAT GCGTACTATTAAATCATTCATCCAAGGATTTCTGCCAGGAATTGCTCTGAA
genomic: ATTGAAGGGATTGAGAAGGCAGCTCCATTTCTGAAGCCTTTGATTGAAATgtacgtgcat ... tattgcccagGCGTACTATTAAATCATTCATCCAAGGATTTCTGCCAGGAATTGCTCTGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttgttgatttgtcatttcacttatgtcaatttttcttttcaactattgcccagGCGTACTATTAAATCATTCATCCAAGGATTTCTGCCAGGAATTGCTCTGAAGATTTTCCTTATATTGCTCCCTAGCATATTAATGTTTATGTCTAAAGTT
tgttgat putative branch site (score: 4)
tttttcttttcaact putative PPT
aatttttcttttcaa TA-rich tract