1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agaagtttctttaaaaaatcaaataaatcatgttttcaagcttataatagttcatatttaattaatcgtgtactaattactgttcgcatttcatgtgcagCTGAAAACCACACTTAAAGTTTGACTGCAATGGTTAATGTGACAGGACAAAACGTTATCGAGATAAAAGCGATATGTCATTTTCAGTTTTTCACAGAAAA
species | Oryza sativa |
transcript | LOC_Os01g34620.7 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AACCANAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCAT CTGAAAACCACACTTAAAGTTTGACTGCAATGGTTAATGTGACAGGACAAAEST: gi|38477159|gb|CF961292.1|CF961292
genomic: AACCA-AGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCATgtaaggatgg ... tcatgtgcagCTGAAAACCACACTTAAAGTTTGACTGCAATGGTTAATGTGACAGGACAAA
EST: AACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCAT CTGAAAACCACAC
genomic: AACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCATgtaaggatgg ... tcatgtgcagCTGAAAACCACAC
aatagttcatatttaattaatcgtgtactaattactgttcgcatttcatgtgcagCTGAAAACCACACTTAAAGTTTGACTGCAATGGTTAATGTGACAGGACAAAACGTTATCGAGATAAAAGCGATATGTCATTTTCAGTTTTTCACAGAAAA
tactaat putative branch site (score: 1)
ttcatatttaattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaagtttctttaaaaaatcaaataaatcatgttttcaagcttataatagttcatatttaattaatcgtgtactaattactgttcgcatttcatgtgcagCTGAAAACCACACTTAAAGTTTGACTGCAATGGTTAATGTGACAGGACAAAACGTTATCGAGATAAAAGCGATATGTCATTTTCAGTTTTTCACAGAAAA
- - - - - - aaaaaat
- - - - - - - - - - - - - atcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgtt