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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agaagtttctttaaaaaatcaaataaatcatgttttcaagcttataatagttcatatttaattaatcgtgtactaattactgttcgcatttcatgtgcagCTGAAAACCACACTTAAAGTTTGACTGCAATGGTTAATGTGACAGGACAAAACGTTATCGAGATAAAAGCGATATGTCATTTTCAGTTTTTCACAGAAAA

Basic information

species Oryza sativa
transcript LOC_Os01g34620.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88847090|gb|CI001362.1|CI001362
EST:     AACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCAT                         CTGAAAACCACACTTAAAGTTTGACTGCAATGGTTAATGTGACAGGACAAA
genomic: AACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCATgtaaggatgg ... tcatgtgcagCTGAAAACCACACTTAAAGTTTGACTGCAATGGTTAATGTGACAGGACAAA
EST: gi|38477159|gb|CF961292.1|CF961292
EST:     AACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCAT                         CTGAAAACCACAC
genomic: AACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCATgtaaggatgg ... tcatgtgcagCTGAAAACCACAC
EST: gi|33680953|gb|CF309192.1|CF309192
EST:     AACCANAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCAT                         CTGAAAACCACACTTAAAGTTTGACTGCAATGGTTAATGTGACAGGACAAA
genomic: AACCA-AGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCATgtaaggatgg ... tcatgtgcagCTGAAAACCACACTTAAAGTTTGACTGCAATGGTTAATGTGACAGGACAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatagttcatatttaattaatcgtgtactaattactgttcgcatttcatgtgcagCTGAAAACCACACTTAAAGTTTGACTGCAATGGTTAATGTGACAGGACAAAACGTTATCGAGATAAAAGCGATATGTCATTTTCAGTTTTTCACAGAAAA
                         tactaat  putative branch site (score: 1)
     ttcatatttaattaat  TA-rich tract