Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccatcaatcaaatctctttcctcaacttacatattactactatccatcgccatccacatctttcctttttttatgttgtattttatttaaagggtttgaactgaaactagccttggaatgtctggaagctctgaatccgtcttttttttttgggtttaacatctctgctttcaacagGTTGCAGTGTATCCCGGGAATGTATTGGCTCTTTATATGTCGAAGCCACCTGGTTTCAGATACCGTAGTGGGCAGTACATCTTCATAAAATGCACTGCTG

Basic information

species Oryza sativa
transcript LOC_Os01g25820.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58665614|gb|CK054300.1|CK054300
EST:     AGCGTATTCTTCGGTTGTTTAGGAGCCATGATGCAGTTGGGATTCAGAAG                         GTTGCAGTGTATCCCGGGAATGTATTGGCTCTTTATATGTCGAAGCCACCT
genomic: AGCGTATTCTTCGGTTGTTTAGGAGCCATGATGCAGTTGGGATTCAGAAGgtaccatcaa ... ctttcaacagGTTGCAGTGTATCCCGGGAATGTATTGGCTCTTTATATGTCGAAGCCACCT
EST: gi|29679760|gb|CB676035.1|CB676035
EST:     AGCGTATTCTTCGGTTGTTTAGGAGCCATGATGCAGTTGGGATTCAGAAG                         GTTGCAGTGTATCCCGGGAATGTATTGGCTCTTTATATGTCGAAGCCACCT
genomic: AGCGTATTCTTCGGTTGTTTAGGAGCCATGATGCAGTTGGGATTCAGAAGgtaccatcaa ... ctttcaacagGTTGCAGTGTATCCCGGGAATGTATTGGCTCTTTATATGTCGAAGCCACCT
EST: gi|27554471|gb|CA998371.1|CA998371
EST:     GGATTCAGAAG                         GTTGCAGTGTATCCCGGGAATGTATTGGCTCTTTATATGTCGAAGCCACCT
genomic: GGATTCAGAAGgtaccatcaa ... ctttcaacagGTTGCAGTGTATCCCGGGAATGTATTGGCTCTTTATATGTCGAAGCCACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggaagctctgaatccgtcttttttttttgggtttaacatctctgctttcaacagGTTGCAGTGTATCCCGGGAATGTATTGGCTCTTTATATGTCGAAGCCACCTGGTTTCAGATACCGTAGTGGGCAGTACATCTTCATAAAATGCACTGCTG
                               gtttaac  putative branch site (score: 3)
                                       tctctgctttc  CT-rich tract
                 tctttttttttt  TA-rich tract