1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacttttaatggttctttagtctggaaatccttaaacatataagcgagaaaaggaaaaccaacacatgatcttttctggcatttattgttgttttttagtcttaacttgctttacgcgcttcttacttaacagGCATATCACAGAGAACTATGGGAACAAATACTACGAAGTCCGCCTCCACCCCAGCCTCGTTTGGTGCGCCAGCAACCCAGAAAGATGCTTCCGGATAATA
species | Oryza sativa |
transcript | LOC_Os01g19870.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TATGTTCCTGGATTGCGAAAGGCGTGACTTCGTTGTCCAG GCATATCACAGAGAACTATGGGAACAAATACTACGAAGTCCGCCTCCACCCEST: gi|86483335|gb|CI125968.1|CI125968
genomic: TATGTTCCTGGATTGCGAAAGGCGTGACTTCGTTGTCCAGgtacttttaa ... tacttaacagGCATATCACAGAGAACTATGGGAACAAATACTACGAAGTCCGCCTCCACCC
EST: GGACTGCAGATATGTTCCTGGATTGCGAAAGGCGTGACTTCGTTGTCCAG GCATATCACAGAGAACTATGGGAACAAATACTACGAAGTCCGCCTCCACCCEST: gi|88533329|gb|CI460881.1|CI460881
genomic: GGACTGCAGATATGTTCCTGGATTGCGAAAGGCGTGACTTCGTTGTCCAGgtacttttaa ... tacttaacagGCATATCACAGAGAACTATGGGAACAAATACTACGAAGTCCGCCTCCACCC
EST: CGTGACTTCGTTGTCCAG GCATATCACAGAGAACTATGGGAACAAATACTACGAAGTCCGCCTCCACCCEST: gi|88516290|gb|CI443944.1|CI443944
genomic: CGTGACTTCGTTGTCCAGgtacttttaa ... tacttaacagGCATATCACAGAGAACTATGGGAACAAATACTACGAAGTCCGCCTCCACCC
EST: GCGTGACTTCGTTGTCCAG GCATATCACAGAGAACTATGGGAACAAATACTACGAAGTCCGCCTCCACCCEST: gi|88956094|gb|CI092382.1|CI092382
genomic: GCGTGACTTCGTTGTCCAGgtacttttaa ... tacttaacagGCATATCACAGAGAACTATGGGAACAAATACTACGAAGTCCGCCTCCACCC
EST: GGACTGCAGATATGTTCCTGGATTGCGAAAGGCGTGACTTCGTTGTCCAG GCATATCACAGAGAACTATGGGAACAAATACTACGAAGTCCGCCTCCACCCEST: gi|88524107|gb|CI451996.1|CI451996
genomic: GGACTGCAGATATGTTCCTGGATTGCGAAAGGCGTGACTTCGTTGTCCAGgtacttttaa ... tacttaacagGCATATCACAGAGAACTATGGGAACAAATACTACGAAGTCCGCCTCCACCC
EST: GACTTCGTTGTCCAG GCATATCACAGAGAACTATGGGAACAAATACTACGAAGTCCGCCTCCACCCEST: gi|86417381|gb|CI031590.1|CI031590
genomic: GACTTCGTTGTCCAGgtacttttaa ... tacttaacagGCATATCACAGAGAACTATGGGAACAAATACTACGAAGTCCGCCTCCACCC
EST: GGACTGCAGATATGTTCCTGGATTGCGAAAGGCGTGACTTCGTTGTCCAG GCATATCACAGAGAACTATGGGAACAAATACTACGAAGTCCGCCTCCACCC
genomic: GGACTGCAGATATGTTCCTGGATTGCGAAAGGCGTGACTTCGTTGTCCAGgtacttttaa ... tacttaacagGCATATCACAGAGAACTATGGGAACAAATACTACGAAGTCCGCCTCCACCC
gcatttattgttgttttttagtcttaacttgctttacgcgcttcttacttaacagGCATATCACAGAGAACTATGGGAACAAATACTACGAAGTCCGCCTCCACCCCAGCCTCGTTTGGTGCGCCAGCAACCCAGAAAGATGCTTCCGGATAATA
ttcttac putative branch site (score: 16)
cttcttactt CT-rich tract
tattgttgtttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttttaatggttctttagtctggaaatccttaaacatataagcgagaaaaggaaaaccaacacatgatcttttctggcatttattgttgttttttagtcttaacttgctttacgcgcttcttacttaacagGCATATCACAGAGAACTATGGGAACAAATACTACGAAGTCCGCCTCCACCCCAGCCTCGTTTGGTGCGCCAGCAACCCAGAAAGATGCTTCCGGATAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG