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gtcagcacaacacatacatgacattttaattgccatcttaatatatctatgttcctcctttttgttccctttccatgacagacttgtttcacgaatgaatatgtagAAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTCCTGCACTGCTTGCGAGATGGCTGTTGTCTGGATACAGAATCAGCTCCGA
species | Oryza sativa |
transcript | LOC_Os01g18630.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAG AAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTCEST: gi|29662754|gb|CB659029.1|CB659029
genomic: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAGgtcagcacaa ... gaatatgtagAAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC
EST: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAG AAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTCEST: gi|87022160|gb|CI259232.1|CI259232
genomic: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAGgtcagcacaa ... gaatatgtagAAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC
EST: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAG AAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTCEST: gi|218493897|gb|FG949292.1|FG949292
genomic: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAGgtcagcacaa ... gaatatgtagAAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC
EST: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAG AAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTCEST: gi|29665540|gb|CB661815.1|CB661815
genomic: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAGgtcagcacaa ... gaatatgtagAAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC
EST: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAG AAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTCEST: gi|29645988|gb|CB650995.1|CB650995
genomic: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAGgtcagcacaa ... gaatatgtagAAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC
EST: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAG AAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTCEST: gi|29664682|gb|CB660957.1|CB660957
genomic: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAGgtcagcacaa ... gaatatgtagAAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC
EST: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAG AAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTCEST: gi|29664681|gb|CB660956.1|CB660956
genomic: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAGgtcagcacaa ... gaatatgtagAAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC
EST: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAG AAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTCEST: gi|29683212|gb|CB679487.1|CB679487
genomic: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAGgtcagcacaa ... gaatatgtagAAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC
EST: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAG AAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC
genomic: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAGgtcagcacaa ... gaatatgtagAAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC
ttcctcctttttgttccctttccatgacagacttgtttcacgaatgaatatgtagAAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTCCTGCACTGCTTGCGAGATGGCTGTTGTCTGGATACAGAATCAGCTCCGA
aatgaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagcacaacacatacatgacattttaattgccatcttaatatatctatgttcctcctttttgttccctttccatgacagacttgtttcacgaatgaatatgtagAAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTCCTGCACTGCTTGCGAGATGGCTGTTGTCTGGATACAGAATCAGCTCCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC