1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatcgctgtcaagttgtttattttgcgactatatgattacagtatcctgtttttcaactccagctgctgttagactgtcataataaatctgctactacatgtttgcacactatttgactgcatttaaaaactcagatagcctatatttttagttgcctgctactgggtgtatttctaatgatcccatcatgtttgcagACTGAAAGTGAGCTGGTAGAAGCAGTTGACCGTGACCTCAGGAAGATGCTGATAAATCCTAAAGCAGTGGACCCTTTGGTCCTTGGCGTCCGGGTATGGC
species | Oryza sativa |
transcript | LOC_Os01g18320.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TACTTCTGAACTACATAGGAGGTTCTACAAATACAGGGATTGTTTCCAAG ACTGAAAGTGAGCTGGTAGAAGCAGTTGACCGTGAACTCAGGAAGATGCTGEST: gi|86495274|gb|CI137907.1|CI137907
genomic: TACTTCTGAACTACATAGGAGGTTCTACAAATACAGGGATTGTTTCCAAGgtatcgctgt ... atgtttgcagACTGAAAGTGAGCTGGTAGAAGCAGTTGACCGTGACCTCAGGAAGATGCTG
EST: CTACATAGGAGGTTCTACAAATACAGGGATTGTTTCCAAG ACTGAAAGTGAGCTGGTAGAAGCAGTTGACCGTGACCTCAGGAAGATGCTGEST: gi|58611260|gb|CK038972.1|CK038972
genomic: CTACATAGGAGGTTCTACAAATACAGGGATTGTTTCCAAGgtatcgctgt ... atgtttgcagACTGAAAGTGAGCTGGTAGAAGCAGTTGACCGTGACCTCAGGAAGATGCTG
EST: TACTTCTGAACTACATAGGAGGTTCTACAAATACAGGGATTGTTTCCAAG ACTGAAAGTGAGCTGGTAGAAGCAGTTGACCGTGACCTCAGGAAGATGCTGEST: gi|29679842|gb|CB676117.1|CB676117
genomic: TACTTCTGAACTACATAGGAGGTTCTACAAATACAGGGATTGTTTCCAAGgtatcgctgt ... atgtttgcagACTGAAAGTGAGCTGGTAGAAGCAGTTGACCGTGACCTCAGGAAGATGCTG
EST: TACTTCTGAACTACATAGGAGGTTCTACAAATACAGGGATTGTTTCCAAG ACTGAAAGTGAGCTGGTAGAAGCAGTTGACCGTGACCTCAGGAAGATGCTGEST: gi|58695770|gb|CK084457.1|CK084457
genomic: TACTTCTGAACTACATAGGAGGTTCTACAAATACAGGGATTGTTTCCAAGgtatcgctgt ... atgtttgcagACTGAAAGTGAGCTGGTAGAAGCAGTTGACCGTGACCTCAGGAAGATGCTG
EST: TACTTCTGAACTACATAGGAGGTTCTACATATACAGGGATTGTTTCCAAG ACTGAAAGTGAGCTGTTAGAAGCAGTTGACCGTGACCTCAGGAAGATGCTGEST: gi|18387711|gb|BM420909.1|BM420909
genomic: TACTTCTGAACTACATAGGAGGTTCTACAAATACAGGGATTGTTTCCAAGgtatcgctgt ... atgtttgcagACTGAAAGTGAGCTGGTAGAAGCAGTTGACCGTGACCTCAGGAAGATGCTG
EST: ACTTCTGGAACTACATAGGAGGTTCTACAAATACAGGGATTGTTTCCAAG ACTGAAAGTGAGCTGGTAGAACCACGTTGACCGTGACCTCAGGAAGATGCT
genomic: ACTTCT-GAACTACATAGGAGGTTCTACAAATACAGGGATTGTTTCCAAGgtatcgctgt ... atgtttgcagACTGAAAGTGAGCTGGTAGAAGCA-GTTGACCGTGACCTCAGGAAGATGCT
tatttttagttgcctgctactgggtgtatttctaatgatcccatcatgtttgcagACTGAAAGTGAGCTGGTAGAAGCAGTTGACCGTGACCTCAGGAAGATGCTGATAAATCCTAAAGCAGTGGACCCTTTGGTCCTTGGCGTCCGGGTATGGC
ttctaat putative branch site (score: 26)
tatttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcgctgtcaagttgtttattttgcgactatatgattacagtatcctgtttttcaactccagctgctgttagactgtcataataaatctgctactacatgtttgcacactatttgactgcatttaaaaactcagatagcctatatttttagttgcctgctactgggtgtatttctaatgatcccatcatgtttgcagACTGAAAGTGAGCTGGTAGAAGCAGTTGACCGTGACCTCAGGAAGATGCTGATAAATCCTAAAGCAGTGGACCCTTTGGTCCTTGGCGTCCGGGTATGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA