1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagttgatctttttattatttttgtacatcagaaataccatctcaaggggtgtgggatttattgtttgctattcacagGGAAAAGGAACTTCGTCCTCTTGTGCCTGATGACTACCAAGTAAAGATAATTGCTCAGGAGGA
species | Oryza sativa |
transcript | LOC_Os01g16414.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATTATCCTGACAGGAGGAAGCACGCTATTCCCTCGATTCACCGAAAGATT GGAAAAGGAACTTCGTCCTCTTGTGCCTGATGACTACCAAGTAAAGATAATEST: gi|86426261|gb|CI071358.1|CI071358
genomic: ATTATCCTGACAGGAGGAAGCACGCTATTCCCTCGATTCACCGAAAGATTgtaagttgat ... ctattcacagGGAAAAGGAACTTCGTCCTCTTGTGCCTGATGACTACCAAGTAAAGATAAT
EST: ATTATCCTGACAGGAGGAAGCACGCTATTCCCTCGATTCACCGAAAGATT GGAAAAGGAACTTCGTCCTCTTGTGCCTGATGACTACCAAGTAAAGATAATEST: gi|86487394|gb|CI130027.1|CI130027
genomic: ATTATCCTGACAGGAGGAAGCACGCTATTCCCTCGATTCACCGAAAGATTgtaagttgat ... ctattcacagGGAAAAGGAACTTCGTCCTCTTGTGCCTGATGACTACCAAGTAAAGATAAT
EST: ATTATCCTGACAGGAGGAAGCACGCTATTCCCTCGATTCACCGAAAGATT GGAAAAGGAACTTCGTCCTCTTGTGCCTGATGACTACCAAGTAAAGATAATEST: gi|86496996|gb|CI139629.1|CI139629
genomic: ATTATCCTGACAGGAGGAAGCACGCTATTCCCTCGATTCACCGAAAGATTgtaagttgat ... ctattcacagGGAAAAGGAACTTCGTCCTCTTGTGCCTGATGACTACCAAGTAAAGATAAT
EST: ATTATCCTGACAGGAGGAAGCACGCTATTCCCTCGATTCACCGAAAGATT GGAAAAGGAACTTCGTCCTCTTGTGCCTGATGACTACCAAGTAAAGATAATEST: gi|86427550|gb|CI072647.1|CI072647
genomic: ATTATCCTGACAGGAGGAAGCACGCTATTCCCTCGATTCACCGAAAGATTgtaagttgat ... ctattcacagGGAAAAGGAACTTCGTCCTCTTGTGCCTGATGACTACCAAGTAAAGATAAT
EST: ATTATCCTGACAGGAGGAAGCACGCTATTCCCTCGATTCACCGAAAGATT GGAAAAGGAACTTCGTCCTCTTGTGCCTGATGACTACCAAGTAAAGATAATEST: gi|58669740|gb|CK058426.1|CK058426
genomic: ATTATCCTGACAGGAGGAAGCACGCTATTCCCTCGATTCACCGAAAGATTgtaagttgat ... ctattcacagGGAAAAGGAACTTCGTCCTCTTGTGCCTGATGACTACCAAGTAAAGATAAT
EST: ATTATCCTGACAGGAGGAAGCACGCTATTCCCTCGATTCACCGAAAGATT GGAAAAGGAACTTCGTCCTCTTGTGCCTGATGACTACCAAGTAAAGATAATEST: gi|86433723|gb|CI094066.1|CI094066
genomic: ATTATCCTGACAGGAGGAAGCACGCTATTCCCTCGATTCACCGAAAGATTgtaagttgat ... ctattcacagGGAAAAGGAACTTCGTCCTCTTGTGCCTGATGACTACCAAGTAAAGATAAT
EST: ATTATCCTGACAGGAGGAAGCACGCTATTCCCTCGATTCACCGAAAGATT GGAAAAGGAACTTCGTCCTCTTGTGCCTGATGACTACCAAGTAAAGATAAT
genomic: ATTATCCTGACAGGAGGAAGCACGCTATTCCCTCGATTCACCGAAAGATTgtaagttgat ... ctattcacagGGAAAAGGAACTTCGTCCTCTTGTGCCTGATGACTACCAAGTAAAGATAAT
gtacatcagaaataccatctcaaggggtgtgggatttattgtttgctattcacagGGAAAAGGAACTTCGTCCTCTTGTGCCTGATGACTACCAAGTAAAGATAATTGCTCAGGAGGA
atttattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgatctttttattatttttgtacatcagaaataccatctcaaggggtgtgggatttattgtttgctattcacagGGAAAAGGAACTTCGTCCTCTTGTGCCTGATGACTACCAAGTAAAGATAATTGCTCAGGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA