1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagctccagcagtacatctatttagtatgatttttttcataattgcaagttgcaacagtggttgatacattataatcttctttcatagGATGACCATGCAGATTCATCTGTCAGCAATGGCAGTGGAAGTGGAATTGGAAGCTTCCTTGGTTGGGCTATGGCGGTAATCTATATGGGTGGACGACTTC
species | Oryza sativa |
transcript | LOC_Os01g16170.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGCCAAATGGTATTGTCATACCTGTCGGGAGAAGGCTTTTACTGTTGGCG GATGACCATGCAGATTCATCTGTCAGCAATGGCAGTGGAAGTGGAATTGGAEST: gi|88668196|gb|CI722935.1|CI722935
genomic: TGCCAAATGGTATTGTCATACCTGTCGGGAGAAGGCTTTTACTGTTGGCGgtaagctcca ... tctttcatagGATGACCATGCAGATTCATCTGTCAGCAATGGCAGTGGAAGTGGAATTGGA
EST: TGCCAAATGGTATTGTCATACCTGTCGGGAGAAGGCTTTTACTGTTGGCG GATGACCATGCEST: gi|29664316|gb|CB660591.1|CB660591
genomic: TGCCAAATGGTATTGTCATACCTGTCGGGAGAAGGCTTTTACTGTTGGCGgtaagctcca ... tctttcatagGATGACCATGC
EST: CAAATGGTATTGTCATACCTGTCGGGAGAAGGCTTTTACTGTTGGCG GATGACCATGCAGATTCATCTGTCAGCAATGGCAGTGGAAGTGGAATTGGAEST: gi|29676459|gb|CB672734.1|CB672734
genomic: CAAATGGTATTGTCATACCTGTCGGGAGAAGGCTTTTACTGTTGGCGgtaagctcca ... tctttcatagGATGACCATGCAGATTCATCTGTCAGCAATGGCAGTGGAAGTGGAATTGGA
EST: TGCCAAATGGTATTGTCATACCTGTCGGGAGAAGGCTTTTACTGTTGGCG GATGACCATGCAGATTCATCTGTCAGCAATGGCAGTGGAAGTGGAATTGGAEST: gi|29663859|gb|CB660134.1|CB660134
genomic: TGCCAAATGGTATTGTCATACCTGTCGGGAGAAGGCTTTTACTGTTGGCGgtaagctcca ... tctttcatagGATGACCATGCAGATTCATCTGTCAGCAATGGCAGTGGAAGTGGAATTGGA
EST: TGCCAAATGGTATTGTCATACCTGTCGGGAGAAAGCTTTTACTGTTGGCG GATGACCATGCAGATTCATCTGTCAGCAATGGCAGTGGAAGTGGAATTGGA
genomic: TGCCAAATGGTATTGTCATACCTGTCGGGAGAAGGCTTTTACTGTTGGCGgtaagctcca ... tctttcatagGATGACCATGCAGATTCATCTGTCAGCAATGGCAGTGGAAGTGGAATTGGA
ttttcataattgcaagttgcaacagtggttgatacattataatcttctttcatagGATGACCATGCAGATTCATCTGTCAGCAATGGCAGTGGAAGTGGAATTGGAAGCTTCCTTGGTTGGGCTATGGCGGTAATCTATATGGGTGGACGACTTC
ggttgat putative branch site (score: 5)
tcttctttcat putative PPT
ttgatacattataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctccagcagtacatctatttagtatgatttttttcataattgcaagttgcaacagtggttgatacattataatcttctttcatagGATGACCATGCAGATTCATCTGTCAGCAATGGCAGTGGAAGTGGAATTGGAAGCTTCCTTGGTTGGGCTATGGCGGTAATCTATATGGGTGGACGACTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA