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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctaactttctctgatgacagacttccagtcttgtttcaagaaaaaatatgataaccattattgctgtttactttgcattaacttcttcacattctgcagACAATGACTGGTTCAGCATTGAGGAGAGACCTCCTGTTGCATATGTGAAACTTGAGATTTTAGAAGGATCCGACATGAAACCATCTGATATGAATG

Basic information

species Oryza sativa
transcript LOC_Os01g14050.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g14050.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G144403_T01 (Zea mays), 3'ss of exon 9
tctaactttctctgatgacagacttccagtct-----tgtttcaagaaaaaatatgataaccattattgctgtttactt---tgcattaacttcttcacattctgcagACAATGACTGGTTCAGCATTGAGGAGAGACCTCCTGTTGCATATGTGAAACTTGAGATTTTAGAAGGATCCGACATGAAACCATCTGATATGAATG
          |  || ||   ||| ||| | |     |  |  ||    | |  |      |  |  || | ||| ||    || |  || |||||   ||||| |||| ||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| | |||||||| ||||||||||| ||||
--------gtttagaagaataactcccattttgtaaattctgtaatggtacaccttcagttcccttctgttattttctcaactgtaccaatttctttggattctacagAAAATAACTGGTTCAGCATTGAGGAGAGACCTCCTATTGCATATGTGAAGCTTGAGATTCTAGAAGGAACTGACATGAAGCCATCTGATATAAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatatgataaccattattgctgtttactttgcattaacttcttcacattctgcagACAATGACTGGTTCAGCATTGAGGAGAGACCTCCTGTTGCATATGTGAAACTTGAGATTTTAGAAGGATCCGACATGAAACCATCTGATATGAATG
                               cattaac  putative branch site (score: 2)
                                     cttcttcacattct  CT-rich tract
                      tttacttt  TA-rich tract