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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacccgttttcatgccatgcaaaaccaccaaattcatcgtatttttgtgcttcacaggatgtacctaagtttcattcttatgtaaacaaattccaattttttcattgactacctttcatctactagaacatcactaatgcaatcatgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGCAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG

Basic information

species Oryza sativa
transcript LOC_Os01g13770.3
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g13770.3 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G070605_T01 (Zea mays), 3'ss of exon 9
gtaacccgttttcatgccatgcaaaaccaccaaattcatcgtatttttgtgcttcacaggatgtacctaagtttcattcttatgtaaacaaattccaattttttcattgactacctttcatctactagaacatcactaatgcaatcatgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGCAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG
                                     | | |   |      || |     | || ||   |||   |       | |  ||  | | | |||  | ||   | ||  ||| |  | ||      | |||| |||  | |  ||||| ||||||| |||||  ||||||||||||| |||||||| ||||| || ||||||||||||||  | || || |||||||| ||||| ||| |||||||||
-----------------------------------gtaacatgaatcacccgtttagcaattttagctggctttggcttgc---cacatgaagcctagtattt--actg---atctaccattttgttga------ccaatg-aatggtat--tgcagATTGCTACGAACACCTTGGAGCGAGTGGCTCCTCTGACACATGCTGTGGGCAATGTGTTGAAGCGTGTGTTTGTCATTGGCTTCTCAATCGTTGTTTTTG

upper sequence: LOC_Os01g13770.3 (Oryza sativa), 3'ss of exon 8
lower sequence: EFJ15759 (Selaginella moellendorffii), 3'ss of exon 9
gtaacccgttttcatgccatgcaaaaccaccaaattcatcgtatttttgtgcttcacaggatgtacctaagtttcattcttatgtaaacaaattccaattttttcattgactacctttcatctactagaacatcactaatgcaatcatgtcatgc-agGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGCAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG
                                                                                                             |  || ||   |||  |  | ||              ||||  | | || ||||||  |||||| ||||||||||||||||||| |||||||| || ||||| ||  | || || || ||||||||||| ||||| ||| || |||| |
-----------------------------------------------------------------------------------------------------------gtaagactttagttcttttgcatcaaaggcggcttgtcaatgttttcccagATTGCTAACAACACTTTGGAGCGAGTGGCCCCTCTAACGCATGCTGTCGGCAACGTTCTAAAGAGAGTGTTCGTCATTGGTTTCTCTATCGTTATTTTCG

upper sequence: LOC_Os01g13770.3 (Oryza sativa), 3'ss of exon 8
lower sequence: EFJ38162 (Selaginella moellendorffii), 3'ss of exon 8
gtaacccgttttcatgccatgcaaaaccaccaaattcatcgtatttttgtgcttcacaggatgtacctaagtttcattcttatgtaaacaaattccaattttttcattgactacctttcatctactagaacatcactaatgcaatcatgtcatgc-agGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGCAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG
                                                                                                             |  || ||   |||  |  | ||              ||||  | | || ||||||  |||||| ||||||||||||||||||| |||||||| || ||||| ||  | || || || ||||||||||| ||||| ||| || ||||||
-----------------------------------------------------------------------------------------------------------gtaagactttagttcttttgcatcaaaggcggcttgtcaatgttctcccagATTGCTAACAACACTTTGGAGCGAGTGGCCCCTCTAACGCATGCTGTCGGCAACGTTCTAAAGAGAGTGTTCGTCATTGGTTTCTCTATCGTTATTTTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86848816|gb|CI295657.1|CI295657
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29661885|gb|CB658160.1|CB658160
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|86598026|gb|CI278416.1|CI278416
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29685282|gb|CB681557.1|CB681557
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTCCCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29687904|gb|CB684179.1|CB684179
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|325493498|gb|JG458022.1|JG458022
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGA
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGA
EST: gi|29679987|gb|CB676262.1|CB676262
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|88983468|gb|CI028695.1|CI028695
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|88980311|gb|CI026578.1|CI026578
EST:     ACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: ACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|55408699|gb|CV721075.1|CV721075
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29685328|gb|CB681603.1|CB681603
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|87040823|gb|CI195445.1|CI195445
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29666541|gb|CB662816.1|CB662816
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29671527|gb|CB667802.1|CB667802
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|84117005|gb|CD150772.1|CD150772
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|86501723|gb|CI144356.1|CI144356
EST:     CGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: CGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACC-TCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29616354|gb|CB621366.1|CB621366
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29616223|gb|CB621235.1|CB621235
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|58690439|gb|CK079126.1|CK079126
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|88987992|gb|CI018042.1|CI018042
EST:     TCGTTTCTGACTTTTTCTTCGTGGGACTGTTCTACCACCTCTATAAACAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29663112|gb|CB659387.1|CB659387
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|313084102|gb|HO213885.1|HO213885
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29618840|gb|CB623852.1|CB623852
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|89169034|gb|CI020574.1|CI020574
EST:     GTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: GTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|88975808|gb|CI024059.1|CI024059
EST:     CCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: CCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|88971439|gb|CI017753.1|CI017753
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29663772|gb|CB660047.1|CB660047
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|88971431|gb|CI017745.1|CI017745
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|87016722|gb|CI275724.1|CI275724
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29613763|gb|CB618776.1|CB618776
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|86831593|gb|CI301443.1|CI301443
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|56157641|gb|C24843.2|C24843
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29658696|gb|CB654971.1|CB654971
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29659419|gb|CB655694.1|CB655694
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|88994677|gb|CI036258.1|CI036258
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|44677263|gb|CR290697.1|CR290697
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29662714|gb|CB658989.1|CB658989
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29663111|gb|CB659386.1|CB659386
EST:     TCGTTTTTGACCTTTTCTTCGTGGGACTGTTCTACCACCTTTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29671609|gb|CB667884.1|CB667884
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|86254987|gb|CI017107.1|CI017107
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29685820|gb|CB682095.1|CB682095
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29685985|gb|CB682260.1|CB682260
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|86418717|gb|CI053518.1|CI053518
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29660916|gb|CB657191.1|CB657191
EST:     TCGTTTTTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|88982620|gb|CI028035.1|CI028035
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29657796|gb|CB654071.1|CB654071
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29643944|gb|CB648951.1|CB648951
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29661884|gb|CB658159.1|CB658159
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGC
EST: gi|88983619|gb|CI028787.1|CI028787
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|25797136|gb|CA753097.1|CA753097
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|88971539|gb|CI017853.1|CI017853
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|88844075|gb|CI001132.1|CI001132
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|88217814|gb|CI217663.1|CI217663
EST:     ACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: ACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29643945|gb|CB648952.1|CB648952
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATACCCAG                         GTTGTTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29656095|gb|CB652370.1|CB652370
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29683569|gb|CB679844.1|CB679844
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|86250525|gb|CI003643.1|CI003643
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|86854673|gb|CI258966.1|CI258966
EST:     CGTTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACATACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: CG-TTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29658105|gb|CB654380.1|CB654380
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29655875|gb|CB652150.1|CB652150
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|86828588|gb|CI278677.1|CI278677
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29636760|gb|CB641769.1|CB641769
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29642430|gb|CB647437.1|CB647437
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29657882|gb|CB654157.1|CB654157
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|88342868|gb|CI640201.1|CI640201
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattgactacctttcatctactagaacatcactaatgcaatcatgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGCAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG
                               cactaat  putative branch site (score: 2)