1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tggaaaaaccgaaaaatattatagcactagctttgatgtcagataactttactttgttcccctgtctagatttctaattgactatttcttgtctgaacagGGCTATGGATCAAAGGGTAACAAGATCCACCATTCTGGGCCTCTAATTTGCCCTTCAGGCAATGTCGATCAGATGCTGAAGGAAAATGACCGCCAAATTC
species | Oryza sativa |
transcript | LOC_Os01g10430.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGTATTTCAGCAGAAAGATGACAGGAGTAGCAGGGTGGATGGAGCTATT GGCTATGGATCAAAGGGTAACAAGATCCACCATTCTGGGCCTCTAATTTGCEST: gi|29619148|gb|CB624160.1|CB624160
genomic: AAGTATTTCAGCAGAAAGATGACAGGAGTAGCAGGGTGGATGGAGCTATTgtaagtatct ... gtctgaacagGGCTATGGATCAAAGGGTAACAAGATCCACCATTCTGGGCCTCTAATTTGC
EST: AAGTATTTCAGCAGAAAGATGACAGGAGTAGCAGGGTGGATGGAGCTATT GGCTATGGATCAAAGGGTAACAAGATCCACCATTCTGGGCCTCTAATTTGCEST: gi|88215128|gb|CI214977.1|CI214977
genomic: AAGTATTTCAGCAGAAAGATGACAGGAGTAGCAGGGTGGATGGAGCTATTgtaagtatct ... gtctgaacagGGCTATGGATCAAAGGGTAACAAGATCCACCATTCTGGGCCTCTAATTTGC
EST: AAGTAGTTCAGCAGAAAGATGACAGGAGTAGCAGGGTGGATGGAGCTATT GGCTATGGATCAAAGGGTAACAAGATCCACCATTCTGGGCCTCTAATTTGC
genomic: AAGTATTTCAGCAGAAAGATGACAGGAGTAGCAGGGTGGATGGAGCTATTgtaagtatct ... gtctgaacagGGCTATGGATCAAAGGGTAACAAGATCCACCATTCTGGGCCTCTAATTTGC
actttactttgttcccctgtctagatttctaattgactatttcttgtctgaacagGGCTATGGATCAAAGGGTAACAAGATCCACCATTCTGGGCCTCTAATTTGCCCTTCAGGCAATGTCGATCAGATGCTGAAGGAAAATGACCGCCAAATTC
tttcttgtct CT-rich tract
atttctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaaaaaccgaaaaatattatagcactagctttgatgtcagataactttactttgttcccctgtctagatttctaattgactatttcttgtctgaacagGGCTATGGATCAAAGGGTAACAAGATCCACCATTCTGGGCCTCTAATTTGCCCTTCAGGCAATGTCGATCAGATGCTGAAGGAAAATGACCGCCAAATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- gaaaaac
- - - - - -aaaaata
- - - - - - - - - - - - cactagc
- - - - - - - - - - - - - - - - ttgatgt