1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tctaatgttggtgacaattttctgtagctttttaatatatacaaccttataagttttgtacgatctaacatgagtttggatttcttttttctcctttcagTTATGCGCGTGCTACGGCAGCTACTAACTGGTTAGTATATATGGATCGGCTATTAACTGTTTCACTTGACGAAAGTGAAAAGAAACTAATTGAGAAAAAG
species | Oryza sativa |
transcript | LOC_Os01g10140.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACAAGATTTGCACCTAG TTATGCGCGTGCTACGG-AGCTACTAACTGGTTAGTATATATGGATCGGCTEST: gi|88363324|gb|CI643182.1|CI643182
genomic: ACAAGATTTGCACCTAGgtattaatac ... ctcctttcagTTATGCGCGTGCTACGGCAGCTACTAACTGGTTAGTATATATGGATCGGCT
EST: CTTGAAAGAGTGCTATTTCATGAGTTCTTGAAAACAAGATTTGCACCTAG TTATGCGCGTGCTACGGCAGCTACTAACTGGTTAGTATAT--GGATCGGCTEST: gi|58656974|gb|CK045654.1|CK045654
genomic: CTTGAAAGAGTGCTATTTCATGAGTTCTTGAAAACAAGATTTGCACCTAGgtattaatac ... ctcctttcagTTATGCGCGTGCTACGGCAGCTACTAACTGGTTAGTATATATGGATCGGCT
EST: CTTGAAAGAGTGCTATTTCATGAGTTCTTGAAAACAAGATTTGCACCTAG TTATGCGCGTGCTACGGCAGCTACTAACTGGTTAGTATATATGGA
genomic: CTTGAAAGAGTGCTATTTCATGAGTTCTTGAAAACAAGATTTGCACCTAGgtattaatac ... ctcctttcagTTATGCGCGTGCTACGGCAGCTACTAACTGGTTAGTATATATGGA
cttataagttttgtacgatctaacatgagtttggatttcttttttctcctttcagTTATGCGCGTGCTACGGCAGCTACTAACTGGTTAGTATATATGGATCGGCTATTAACTGTTTCACTTGACGAAAGTGAAAAGAAACTAATTGAGAAAAAG
atctaac putative branch site (score: 6)
tttggatttctttttt putative PPT
atttctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctaatgttggtgacaattttctgtagctttttaatatatacaaccttataagttttgtacgatctaacatgagtttggatttcttttttctcctttcagTTATGCGCGTGCTACGGCAGCTACTAACTGGTTAGTATATATGGATCGGCTATTAACTGTTTCACTTGACGAAAGTGAAAAGAAACTAATTGAGAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - gttggtg
- - - - - - - - - - -ctgtagc
- - - - - - - - - - - - - - - - - - - atacaac