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gtatacaaaaatcctcccagatcgatgaattatatttatttctgtaaactaatgccacttatatctggaaacagATGTTAAGGATGTTAAATATGTCATTAACTATGACTTTCCGGGATCATTGGAGGATTATGTTCATCGCATTGGTCGAACTGGCAGAGCTGGAGCAAAAGG
species | Oryza sativa |
transcript | LOC_Os01g10050.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGGGAAAAGCCCTATCATGACAGCGACTGATGTGGCTGCTCGAGGCTTAG ATGTTAAGGATGTTAAATATGTCATTAACTATGACTTTCCGGGATCATTGGEST: gi|88504584|gb|CI432090.1|CI432090
genomic: AGGGAAAAGCCCTATCATGACAGCGACTGATGTGGCTGCTCGAGGCTTAGgtatacaaaa ... ctggaaacagATGTTAAGGATGTTAAATATGTCATTAACTATGACTTTCCGGGATCATTGG
EST: CTGCTCGAGGCTTAG ATGTTAAGGATGTTAAATATGTCATTAACTATGACTTTCCGGGATCATTGGEST: gi|88484026|gb|CI421297.1|CI421297
genomic: CTGCTCGAGGCTTAGgtatacaaaa ... ctggaaacagATGTTAAGGATGTTAAATATGTCATTAACTATGACTTTCCGGGATCATTGG
EST: TGGCTGCTCGAGGCTTAG ATGTTAAGGATNTTAAATATGTCATTAACTATGACTTTCCGGGATCATTGGEST: gi|86259893|gb|CI065766.1|CI065766
genomic: TGGCTGCTCGAGGCTTAGgtatacaaaa ... ctggaaacagATGTTAAGGATGTTAAATATGTCATTAACTATGACTTTCCGGGATCATTGG
EST: GGCTGCTCGAGGCTTAG ATGTTAAGGATGTAAAATATGTCATTAACTATGACTTTCCGGGATCATTGG
genomic: GGCTGCTCGAGGCTTAGgtatacaaaa ... ctggaaacagATGTTAAGGATGTTAAATATGTCATTAACTATGACTTTCCGGGATCATTGG
gatcgatgaattatatttatttctgtaaactaatgccacttatatctggaaacagATGTTAAGGATGTTAAATATGTCATTAACTATGACTTTCCGGGATCATTGGAGGATTATGTTCATCGCATTGGTCGAACTGGCAGAGCTGGAGCAAAAGG
aactaat putative branch site (score: 2)
atgaattatatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatacaaaaatcctcccagatcgatgaattatatttatttctgtaaactaatgccacttatatctggaaacagATGTTAAGGATGTTAAATATGTCATTAACTATGACTTTCCGGGATCATTGGAGGATTATGTTCATCGCATTGGTCGAACTGGCAGAGCTGGAGCAAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA